Publications by Krasnow Faculty

2012

Brown, K., I. Sugihara, Y. Shinoda, and G. A. Ascoli. “Digital Morphometry of Rat Cerebellar Climbing Fibers Reveals Distinct Branch and Bouton Types.” Journal article and cover page illustration, Journal of Neuroscience 32, (2012): 14670-14684

Gardner, R., A. Vogel, M. Mainetti, and G. A. Ascoli. “Quantitative Measurements of Autobiographical Memory Content.” PLOS ONE 7, no. 9 (2012): 44809.

Halavi, M., K. Hamilton, R. Parekh, and G. A. Ascoli. “Digital Reconstructions of Neuronal Morphology: Three Decades of Research Trends.” Frontiers in Neuroscience 6 (2012): 49.

Hamilton, D., H. Shepherd, M. Martone, and G. A. Ascoli. “An Ontological Approach to Describing Neurons and Their Relationships.” Frontiers in Neuroinformatics 6 (2012): 15.

Myatt, D., T. Hadlington, G. A. Ascoli, and S. Nasuto. “Neuromantic – from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology.” Frontiers in Neuroinformatics 6 (2012): 4.

Ropireddy, D., S. Bachus, and G. A. Ascoli. “Non-Homogeneous Stereological Properties of the Rat Hippocampus from High-Resolution 3D Serial Reconstruction of Thin Histological Sections.” Neuroscience 205 (2012): 91-111.

Evans, R. C., T. Morera-Herreras, Y. Cui, K. Du, T. Sheehan, J. H. Kotaleski, L. Venance, and K. T. Blackwell. “The Effects of NMDA Subunit Composition on Calcium Influx and Spike Timing-Dependent Plasticity in Striatal Medium Spiny Neurons.” PLOS Computational Biology 8, no. 4 (2012): 1002493

Koh, W., and K. T. Blackwell. “Improved Spatial Direct Method with Gradient-Based Diffusion to Retain Full Diffusive Fluctuations.” Journal of Chemical Physics 137, no. 15 (2012): 154111.

Oliveira, R. F., M. Kim, and K. T. Blackwell. “PKA Subcellular Location Effects on Striatal Plasticity: Stochastic Simulations in Spiny Dendrites.” PLOS Computational Biology 8, no. 2 (2012): 1002383.

Iyer, S. C., D. Wang, E. P. R. Iyer, S. A. Trunnell, R. Meduri, R. Shinwari, M. J. Sulkowski, and D. N. Cox. “The RhoGEF Trio Functions in Sculpting Class Specified Dendrite Morphogenesis in Drosophila Sensory Neurons.” PLOS ONE 7, no. 3 (2012): 33634.

Patel, A., A. T. Crooks, and N. Koizumi. “Slumulation: An Agent-Based Modeling Approach to Slum Formations.” Journal of Artificial Societies and Social Simulation 15, no. 4 (2012): 2.

Wise, S. and A. T. Crooks. “Agent Based Modelling and GIS for Community Resource Management: Acequia-based Agriculture.” Computers, Environment and Urban Systems 36, no. 6 (2012): 562-572.

Blair, M. G., N. N-Q. Nguyen, M. L’Etoile, R. F. Oliveira, L. Owen, M. Johnson, S. Albani, M. Andrawis, E. M. Sanders, E. M. Stoneham, and T. C. Dumas. “Altered Composition and Prolonged Activation of Hippocampal AMPA Receptors Enables Deliberative Spatial Navigation in Juvenile Rats.” Journal of Neuroscience 33, no. 30 (2012): 12218-12228.

Dumas, T. C. “Postnatal Alterations in Induction Threshold and Expression Magnitude of Long-Term Potentiation and Long-Term Depression at Hippocampal Synapses.” Hippocampus 22, no. 2 (2012): 188-199.

Wagner, E., M. Lauterbach, T. Kohl, G. S. Williams, J. H. Steinbrecher, J. H. Streich, B. Korf, H. T. Tuan, B. Hagen, S. Luther, G. Hasenfuss, U. Paritz, M. S. Jafri, S. W. Hell, W. J. Lederer, and S. E. Lehnart. “STED Live Cell Super-Resolution Imaging Shows Proliferative Remodeling of t-tube Membrane Structures after Myocardial Infraction.” Circulation Research 111, no. 4 (2012): 402-414.

Amyot, F., T. Zimmermann, J. Riley, J. M. Kainerstorfer, L. Najafizadeh, V. Chernomordik, E. Mooshagian, F. Krueger, A. H. Gandjbakhche, and E. M. Wassermann. “Normative Database of Judgment of Complexity Task with Functional Near Infrared Spectroscopy – Application for Traumatic Brain Injury.” Neuroimage 60, no. 2 (2012): 879-883.

Barbey, A. K., R. Colom, J. Solomon, F. Krueger, C. Forbes, and J. Grafman. “An Integrative Architecture for General Intelligence And Executive Function Revealed By Lesion Mapping.” Brain: A Journal of Neurology 13, no 4 (2012): 1154-1164.

Coelho, C., K. Lê, J. Mozeiko, F. Krueger, and J. Grafman. “Discourse Production Following Injury to the Dorsolateral Prefrontal Cortex.” Neuropsychologia 50, no. 14 (2012): 3564-3572.

Dal Monte, O., F. Krueger, J. Solomon, S. Schintu, K. M. Knutson, M. Strenziok, M. Pardini, A. Leopold, V. Raymont, and J. Grafman. “A Voxel-Based Lesion Study on Facial Emotion Recognition after Penetrating Brain Injury.” Social Cognitive and Affective Neuroscience 7, no. 4 (2012): 413-422.

Driscoll D. M., O. Dal Monte, J. Solomon, F. Krueger, and J. Grafman. “Empathic Deficits in Combat Veterans with Traumatic Brain Injury: A Voxel-Based Lesion Symptom Mapping Study.” Cognitive and Behavioral Neurology 25, no. 4 (2012): 160-166.

Forbes, C. E., J. C. Poore, A. K. Barbey, F. Krueger, J. Solomon, R. H. Lipsky, C. A. Hodgkinson, D. Goldman, and J. Grafman. “BDNF Polymorphism-Dependent OFC and DLPFC Plasticity Differentially Moderates Implicit and Explicit Bias.” Cerebral Cortex 22, no. 11 (2012): 2602-2609.

Glass, L., F. Krueger, J. Solomon, V. Raymont, and J. Grafman. “Mental Paper Folding Performance Following Penetrating Traumatic Brain Injury in Combat Veterans: A Lesion Mapping Study.” Cerebral Cortex 23, no. 7 (2012): 1663-1672.

Knutson, K. M., F. Krueger, O. Dal Monte, V. Raymont, A. D. Snyder, H. E. Kirsch, E. M. Wassermann, and J. Grafman. “Gustatory Cortical Lesions Affect Motivation for Snack Foods.” Cognitive Neuroscience 3, no. 2 (2012):131-138.

Krueger, F., R. Parasuraman, V. Iyengar, M. Thornburg, J. Weel, M. Lin, E. Clarke, K. McCabe, and R. H. Lipsky. “Oxytocin Receptor Genetic Variation Promotes Human Trust Behavior.” Frontiers in Human Neuroscience 6, no. 4 (2012).

Krueger, F., R. Parasuraman, V. Iyengar, M. Thornburg, J. Weel, M. Lin, E. Clarke, K. McCabe, and R. H. Lipsky. “Oxytocin Receptor Genetic Variation Promotes Human Trust Behavior.” Frontiers in Human Neuroscience 6, no. 4 (February 2, 2012): 1-9.

Krueger, F., R. Parasuraman, L. Moody, P. Twieg, E. de Visser, K. McCabe, M. O’Hara, and M. Lee. “Oxytocin Selectively Increases Perceptions of Harm for Victims but Not the Desire to Punish Offenders of Criminal Offenses.” Social Cognitive and Affective Neuroscience 8, no. 5 (2012): 894-898.

Leopold, A., F. Krueger, O. dal Monte, M. Paiva, S. J. Pulaski, J. Solomon, and J. Grafman. “Damage to the Left Ventromedial Prefrontal Cortex Impacts the Affective Facet of Theory of Mind.” Cognitive and Affective Neuroscience 7, no. 8 (2012): 871-880.

Pardini, M., M. Elia, F. Garaci, S. Guida, F. Krueger, F. Benassi, and L. Gialloreti. “Long-Term Cognitive and Behavioral Therapies, Combined With Augmentative Communication, Are Related to Uncinate Fasciculus Integrity in Autism.” Journal of Autism and Developmental Disorders 42, no. 4 (2012): 585-592.

Pardini, M., L. E. Gialloreti, M. Mascolo, F. Benassi, L. Abate, S. Guida, E. Viani, O. Dal Monte, S. Schintu, F. Krueger, and L. Cocito. “Isolated Theory of Mind Deficits and Frontotemporal Dementia Risk: A Longitudinal Pilot Study.” Journal of Neurology, Neurosurgery, and Psychiatry 84, no. 7 (2012): 818-821.

Pardini, M., F. Krueger, M. Koenigs, V. Raymont, C. Hodgkinson, S. Zoubak, D. Goldman, and J. Grafman. “Fatty-Acid Amide Hydrolase and Post-Traumatic Stress Disorder after Combat-Related Penetrating Brain Injury.” Translational Psychiatry 2 (2012): 75.

Lipsky, R. H. “Epigenetic Mechanisms Regulating Learning and Long-Term Memory.” International Journal of Developmental Neuroscience 31, no. 6 (2012): 353-358.

Salvador-Morales, C., P. M. Valenci, W. Gao, R. Karnick, and P. Farokhzad. “Spontaneous Formation of Heterogeneous Patches on Polymer-Lipid Core-shell Particle Surfaces during Self-Assembly.” Small 9, no. 4 (2012): 511-517

Salvador-Morales, C., P. M. Valencia, A. Thakkar, E. Swanson, and R. Langer. “Recent Developments in Multifunctional Hybrid Nanoparticles: Opportunities and Challenges in Cancer Therapy.” Frontiers in Bioscience 4, no. 1 (2012): 529-545.

2011

Ropireddy D., Scorcioni R., Lasher B., Buzsáki G., Ascoli G.: Axonal morphometry of hippocampal pyramidal neurons semi-automatically reconstructed after in-vivo labeling in different CA3 locations. Brain Structure & Function, 216:1-15 (2011).

Costa L., Batista J., Ascoli G.: Communication structure of cortical networks. Front. Comput. Neurosci., 5:6. doi: 10.3389/fncom.2011.00006 (2011).

Brown K., Barrionuevo G., Canty A., De Paola V., Hirsch J., Jefferis G., Lu J., Snippe M., Sugihara I., Ascoli G.: The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics, 9:143-157 (2011).

Donohue D, Ascoli G.: Automated reconstruction of neuronal morphology: an overview. Brain Research Reviews, 67:94-102 (2011).

Gillette T., Brown K., Ascoli G.: The DIADEM Metric: Comparing multiple reconstructions of the same neuron. Neuroinformatics, 9:233-45 (2011).

Ropireddy D., Ascoli G.: Potential synaptic connectivity of different neurons onto pyramidal cells in a 3D reconstruction of the rat hippocampus. Front. Neuroinf., 5:5. doi: 10.3389/fninf.2011.00005 (2011).

Baker J., Perez-Rosello T., Migliore M., Barrionuevo G., Ascoli G.: A computer model of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J. Comput. Neurosci., 31:137-58 (2011).

Perez-Rosello T., Baker J., Ferrante M., Iyengar S., Ascoli G., Barrionuevo G.: Passive and active shaping of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J. Comput. Neurosci., In Press (2011).

Gardner R., Vogel A., Mainetti M., Ascoli G.: Quantitative measurements of autobiographical memory content. Submitted (2011).

Berzhanskaya J., Chernyy N., Gluckman B., Schiff S., Ascoli G.: Modulation of hippocampal rhythms by subthreshold electric fields and network topology. Submitted (2011).

Hamilton D., Shepherd G., Martone M., Ascoli G.: Neurons and their relationships. Submitted (2011).

Ropireddy D., Ascoli G.: Non-homogeneous stereological properties of the rat hippocampus from high-resolution 3D serial reconstruction of thin histological sections. Submitted (2011).

Myatt D., Hadlington T., Ascoli G., Nasuto S.: Neuromantic – from semi manual to semi automatic reconstruction of neuron morphology. Submitted (2011).

“Generating Macroscopic Chaos in a Network of Globally Coupled Phase Oscillators” Paul So and Ernesto Baretto. Chaos 21, 033127 (2011)

“Ion Concentrate Dynamics as a Mechanism for Neuronal Bursting” Ernest Barreto and John R. Cressman. Biological Physics 37, 361-373 (2011)

Kim, Park, Havekes, Chay, Guercio, Oliveira, Abel, Blackwell (2011) Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation, PLoS Comp Biol. 7:e1002084

Koh, Blackwell (2011) An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping. J Chem Phys. 134(15):154103

Butler, A.B. 2011 Evolution of the brain in vertebrates: overview. In Lazareva, O., Shimizu, T., and Wasserman, E. (eds.), How Animals See the World: Behavior, Biology, and Evolution of Vision, Oxford: Oxford University Press, in press.

Butler, A. B., Reiner, A. and Karten, H. J. Evolution of the Amniote Pallium and the Origins of Mammalian Neocortex. Ann. N. Y. Acad. Sci. 1225: 14-27.

Cressman, J.R., Drown, C, Gertz, M., (2011). Ionic Imbalance. Clinical and Genetic Aspects of Epilepsy. ,Intech, 151-172

Gero, JS (2011) A situated cognition view of innovation with implications for innovation policy, in K Husbands-Fealing, J Lane, J Marburger, S Shipp and B Valdez (eds), The Science of Science Policy: A Handbook, Stanford University Press, pp. 104-119

Gero, JS and Kannengiesser, U (2011) Design, in Runco MA, and Pritzker SR (eds) Encyclopedia of Creativity, Second Edition, Academic Press, Vol. 1, pp. 369-375.

N. Kabbani, M.P. Woll, J.C. Nordman, R.Levenson.Dopamine receptor interacting proteins: Targeting neuronal calcium sensor-1/D2 dopamine receptor interaction for antipsychotic drug development. Current Drug Targets. 2011, In press

E. Moreno, S. Vaz, N. Cai, C. Ferrada, C. Quiroz, S. Barodia, N. Kabbani, E. Canela, P. McCormick, C. Lluis, R. Franco, J. Ribeiro, A. Sebastiao, S. Ferre. Dopamine-Galanin Receptor Heteromers Modulate Cholinergic Neurotransmission in Rat Ventral Hippocampus. J Neurosci. 2011 May 18;31(20):7412-7423

E. Moreno, S. Vaz, N. Cai, C. Ferrada, C. Quiroz-Molina, S. Barodia, N. Kabbani, E. Canela, P. McCormick, C. Lluis, R. Franco, J. Ribeiro, A. Sebastiao, S. Ferre. Dopamine-galanin receptor heteromers modulate cholinergic neurotransmission in the rat ventral hippocampus. J. Neurosci., 2011, May 18;31(20):7412-23.

R. Shah, H. Rangwala, N. Kabbani. A Bioinformatic Analysis of the D2 Dopamine Receptor Reveals Patterns in Domain Evolution. Submitted, Biol. Bull.

M. Raiszadeh, M. Ross, P. Russo, M. Schaepper, W. Zhou, J. Deng, D. Ng, A. Dickson, C. Dickson, M. Strom, C. Osorio, T. Soeprono, J. Wulfkuhle, N. Kabbani, E. Petricoin, L. Liotta, W. Kirsch. A Proteomic Analysis of Eccrine Sweat: Implications for the Discovery of Schizophrenia Biomarker Proteins. Submitted, Mol. Cell Proteom.

J.C. Nordman, J.M. Lindstrom, I. M. Damaj, N. Kabbani. Proteomic characterization of a nicotinic acetylcholine receptor signaling networks in peripheral blood lymphocytes. Submitted, FASEB J.

J.C. Nordman, J.M. Lindstrom, S. Clark, N. Kabbani. Mechanisms in alpha 7 nicotinic receptor signaling regulating neural cell growth. In preparation.

J. Towson, D. Veltri, A. Shehu, N. Kabbani. A structural model of the human D2R-D2R dopamine receptor. In preparation.

N.Kabbani, J. C. Nordman, M.P. Woll, R. Levenson. “Dopamine receptor interacting proteins: Targeting neuronal calcium sensor-1/D2 dopamine receptor interaction for antipsychotic drug development”. Curr Drug Targets, In press July, 2011.

N. Kabbani, S. Xu, J.C. Nordman. Purification and biochemical isolation of dopamine receptor protein networks for high throughput mass spectrometry analysis” in Methods in Molecular Biology, edited by N. Kabbani, Springer Protocols, Humana Press. In press, 2011.

Chabernaud, C., Mennes, M., Kardel, P.G., Gaillard, W.D., Kalbfleisch, M.L., Van Meter, J.W., Packer, R., Milham, M.P., Castellanos, F.X., Acosta, M.T. (submitted). Lovastatin regulates brain spontaneous low-frequency brain activity in Neurofibromatosis type 1.

Kalbfleisch, M.L., Loughan, A.R., Roberts J.M. (submitted) Impact of autism diagnosis on neural systems of nonverbal fluid reasoning in adolescent male monozygotic twins.

Kalbfleisch, M.L. (in press). Neurotechnology in Education: Intervening, Enabling, or Enhancing? In J.Giordano (ed.), Neurotechnology: Premises, Potential and Problems (A Volume in the Advances of Neurotechnology: Ethical, Legal, and Social Issues Series).

Kalbfleisch, M.L. (in press). Twice Exceptional Students. In : C.A. Callahan & H. Hertberg-Davis (eds.) Fundamentals of Gifted Education. Routledge.

Kalbfleisch, M.L. and Gillmarten, C. (2011). Giftedness and Neuroscience. In J. Reidl Cross & T. Cross (eds.) Handbook for Counselors Serving Students With Gifts and Talents: Development, Relationships, School Issues, and Counseling Needs/InterventionsHandbook for School Counselors Serving Gifted Students. Waco, TX: Prufrock Press. pp. 89-104.

Kalbfleisch, M.L., Loughan, A.R. (2011). Impact of IQ discrepancy on executive function in high-functioning autism: Insight into twice exceptionality. Journal of Autism and Developmental Disorders. doi 10.1007/s10803-011-1257-2

Kalbfleisch, M.L., Forsythe, C. (2011). Instantiating the Progress of Neurotechnology for Applications in National Defense Intelligence. Synesis: A Journal of Science, Technology, Ethics, & Policy, 2 (1), 47-54. New York, NY: Taylor & Francis.

Pardini M, Elia M, Garaci F, Guida S, Krueger F, Benassi F, Gialloreti L. Long-term cognitive and behavioral therapies, combined with augmentative communication, are related to uncinate fasiculus integrity in autism. Journal of Autism and Developmental Disorders. in press.

Krueger F, Pardini M, Huey ED, Raymont V, Solomon J, Lipsky RH, Hodgkinson CA, Goldman D, Grafman J. The role of the met66 BDNF allele in the recovery of executive functioning following combat-related traumatic brain injury. Journal of Neuroscience 2011; 31(2): 598-606.

Raymont V, Salazar A, Krueger F, Grafman J. The Vietnam Head Injury Study and 40 years of brain injury research. Frontiers in Neurotrauma. Doi: 10.3389/fneur.2011.00015.

Pardini M, Krueger F, Hodgkinson C, Raymont V, Ferrier C, Goldman D, Strenziok M, Guida S, Grafman J. Prefrontal cortex lesions and MAO-A modulate aggression in penetrating traumatic brain injury. Neurology 2011; 76: 1038-1045.

Krueger F*, Strenziok M*, Heinecke A, Lenroot RK, Knutson K, van der Meer E, Grafman, J. Developmental effects of aggressive behavior in male adolescents assessed with structural and functional brain imaging. Social Cognitive and Affective Neuroscience 2011; 6(1): 2-11. *Authors contributed equally to this
work.

Moll J, Zahn R, de Oliveira-Souza R, Bramati IE, Krueger F, Tura B, Cavanagh A, Grafman J. Impairment of prosocial sentiments is associated with frontopolar and septal damage in frontotemporal dementia. NeuroImage 2011; 54(2): 1735-1742.

Krueger F, Landgraf S, van der Meer E, Deshpande G, Hu X. Effective connectivity of the multiplication network: A functional MRI and multivariate Granger causality mapping study. Human Brain Mapping 2010 Aug 16; [Epub ahead of print].

Krueger F*, Strenziok M*, Deshpande G, Lenroot RK, van der Meer E, Grafman J. Fronto-parietal regulation of media violence exposure in adolescents: A multi-method study. Social Cognitive and Affective Neuroscience, Doi: 10.1093/scan/nsq079. *Authors contributed equally to this work.
Mozeiko JL, Le K, Coelho CA, Krueger F, Grafman J. The relationship of story grammar and executive function following TBI. Aphasiology 2011: 25(6&7). 825-836.

Preusse F, van der Meer E, Deshpande G, Krueger F, Wartenburger I. Fluid intelligence allows flexible recruitment of the parieto-frontal network in analogical reasoning. Frontiers in Human Neuroscience. Doi: 10.3389/fnhum.2011.00022.

Le K, Coelho CA, Mozeiko JL, Krueger F, Grafman J. Measuring goodness of story narratives: Implications for traumatic brain injury. Aphasiology 2011: 25(6&7). 748-760.

Landgraf S, Amado I, Brucks M, Krueger F, Krebs M, van der Meer E. Inflexible information acquisition strategies mediate visuo-spatial reasoning in stabilized schizophrenia patients. The World Journal of Biological Psychiatry 2011 Feb 2; [Epub ahead of print].

De Visser, E., & Parasuraman, R. (2011). Adaptive aiding of human-robot teaming: Effects of imperfect automation on performance, trust, and workload. Journal of Cognitive Engineering and Decision Making, in press.

Jha, P., Bisantz, A., Parasuraman, R., & Drury, C. (2011). Air traffic controllers performance in advanced air traffic management system: Part I – Performance results. International Journal of Aviation Psychology, in press.

Parasuraman, R. (2011). Neuroergonomics: Brain, cognition, and performance at work. Current Directions in Psychological Science, 20, 181-186.

Parasuraman, R., & Jiang, Y. (2011). Individual differences in cognition, affect, and performance: Behavioral, neuroimaging, and molecular genetic approaches. NeuroImage. doi:10.1016/j.neuroimage.2011.04.040

Thompson, J., & Parasuraman, R. (2011). Attention, biological motion, and action recognition. NeuroImage, in press.

Ballyns J, Shah J, Gerber, L, Hammond J, Gebreab T, Sikdar S. Objective ultrasonic measures for characterizing myofascial trigger points associated with cervical pain. J Ultrasound Med. 2011 (accepted).

Lebiedowska M, Sikdar S, Eranki A, Garmirian L. Knee joint angular velocities and accelerations during the patellar tendon jerk. J Neuroscience Meth. 2011 (accepted). Article in Press

2010

Ascoli G., Samsonovich A.: NeuroNavigator, A Biologically Inspired Universal Cognitive Microcircuit. In Samsonovich A., Johannsdottir K., Chella A., Goertzel B., Eds., Proceeding of 2010 BICA conference, pp. 10-16, IOS Press (2010).

Migliore M., Ascoli G., Jaffe D.: CA3 cells – Detailed and simplified pyramidal cell models. In Cutsuridis V., Graham B., Cobb S., Vida I. (Eds): “Hippocampal Microcircuits: A Computational Modeller’s Resource Book”, pp353-374, Springer (2010).

Samsonovich A., Ascoli G.: Principal semantic components of language and the measurement of meaning. PLoS One, 5(6):e10921(2010).

Samsonovich A., Goldin R., Ascoli G.: Toward a semantic general theory of everything.Complexity, 15:12-18(2010).

Ascoli G., Gasparini S., Medinilla V., Migliore M.: Local Control of Postinhibitory Rebound Spiking in CA1 Pyramidal Neuron Dendrites. J. Neurosci. 30(18):6434-6442 (2010).

“Synchronized Changes to Relative Neuron Populations in Postnatal Human Neocortical Development” David L. Cooper, James E. Gentle, Ernest Barreto, and James L. Olds
Cognitive Neurodynamics 4, 151-163 (2010)

Kim, Huang, Abel, Blackwell (2010) Temporal sensitivity of protein kinase A activation in late-phase long term potentiation. PLoS Comp Biol 6:e100691

Kotaleski JH, Blackwell KT (2010) Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches. Nat Rev Neurosci. 11:239

Oliveira RF, Terrin A, Di Benedetto G, Cannon RC, Koh W, Kim M, Zaccolo M, Blackwell KT. The role of type 4 phosphodiesterases in generating microdomains of cAMP: large scale stochastic simulations. PLoS One. 2010 Jul 22;5(7):e11725

Manninen T., Hituri K., Kotaleski J.H.,Blackwell K.T., and Linne M.-L. (2010) Postsynaptic signal transduction models for long-term potentiation and depression. Front. Comput. Neurosci., doi: 10.3389

Butler, A.B. 2010 Functional morphology of the brain of ray-finned fishes. In: Encyclopedia of Fish Physiology: From Genome to Environment, A. Farrell (ed.), Elsevier, in press.

Butler, A.B. 2010 Functional Morphology of the Nervous System: An Introduction. In: Encyclopedia of Fish Physiology: From Genome to Environment, A. Farrell (ed.), Elsevier, in press.

Butler, A.B. 2010 Hallmarks of consciousness. In: Self and Non-self, C. Lopez-Larrea (ed.), Austin: Landes Bioscience, in press.

Oubel E, DeCraene M, Cebral JR, Blasco J, Macho J, Putman CM, Blanc R, Frangi A, “Wall motion estimation of intracraneal aneurysms from DSA sequences”, Phys. Meas. 31, 1119-1135, 2010.

Cebral JR, Mut F, Sforza D, Löhner R, Scrivano E, Lylyk P, Putman CM, “Clinical application of image-based CFD for cerebral aneurysms”, IJNMBE (DOI: 10.1002/cnm.1373), 2010.

Sforza D, Löhner R, Putman C, Cebral J, “Hemodynamic analysis of intracranial aneurysms with moving parent arteries: basilar tip aneurysms”, IJNMBE, 26(10): 1219-1227, 2010(DOI: 10.1002/cnm.1385).

Sforza D, Putman CM, Scrivano E, Lylyk P, Cebral JR, “Blood flow characteristics in a terminal basilar tip aneurysm prior to its fatal rupture”, AJNR (DOI: 10.3147/ajnrA2021) 2010.

Mut F, Aubry R, Löhner R, Cebral JR, “Fast numerical solutions in patient-specific simulations of arterial models”, IJNMBE 26(1): 73-85, (DOI 10.1002/cnm.1235), 2010.

Cebral JR, Sheridan M, Putman CM, “Hemodynamics and bleb formation in intracranial aneurysms”, AJNR (10.3174/ajnr.A1819, October 1, 2009), 31(2): 304-310, 2010.

Tateshima S, Chien A, Sayre J, Cebral J, Viñuela F, “The effect of aneurysm geometry on the intra-aneurysmal flow condition”, Neuroradiology 52(12): 1135-1141, 2010.

Cioffi-Revilla, Claudio, J. Daniel Rogers, and Maciej Latek. 2010. “The MASON HouseholdWorld Model of Pastoral Nomad Societies.” In Takadama, Keiki, Claudio Cioffi-Revilla, and Guillaume Deffaunt, eds. 2010. Simulating Interacting Agents and Social Phenomena: The Second World Congress in Social Simulation. Tokyo, New York, and Heidelberg: Springer. Pp. 193204.

Cioffi-Revilla, Claudio. 2010. “MASON RebeLand and Data Aspects of Agent-Based Simulation Models.” In Advances in Cross-Cultural Decision Making, edited by Dylan Schmorrow and D. Nicholson. Orlando, FL: CRC Press/Taylor and Francis. Pp. 291301.

Cioffi-Revilla, Claudio, and Mark Rouleau. 2010. “MASON RebeLand: An Agent-Based Model of Politics, Environment, and Insurgency.” International Studies Review, Vol. 12, no. 1, March 2010, pp: 3146. Available through JSTOR and SSRN: http://hq.ssrn.com

Cioffi-Revilla, Claudio. 2010. “Computational Social Science.” Wiley Interdisciplinary Reviews (WIREs): Computational Statistics 2: Available online. DOI: 10.1002/wics.95 Available through JSTOR and SSRN: http://hq.ssrn.com

Claudio Cioffi-Revilla. 2010. “A Methodology for Complex Social Simulations,” Journal of Artificial Societies and Social Simulation, Vol. 13, no. 1, 7. Available online:http://jasss.soc.surrey.ac.uk/13/1/7.html

Iyer, E.P.R. and Cox, D.N. (2010). Laser capture microdissection of Drosophila peripheral neurons. J. Vis. Exp. 39,

Crooks, A. T. (2010), Constructing and Implementing an Agent-Based Model of Residential Segregation through Vector GIS, International Journal of Geographical Information Science, 24(5): 661-675.

Batty, M., A. Hudson-Smith, R. Milton, and A. Crooks. “Map MashUps, Web 2.0
and the GIS Revolution.” Annals of GIS 16, no. 1 (2010): 1-13.

Dumas, T.C., Gillette, T., Ferguson, D., Hamilton, K. & Sapolsky, R.M. (2010) Anti-glucocorticoid gene therapy reverses the impairing effects of elevated corticosterone on spatial memory, hippocampal neuronal excitability, and synaptic plasticity. J. Neuroscience, 30:1712-1720.

Stoneham, E.M., Sanders, E.M., Sanyal, M., & Dumas, T.C. (2010) Late postnatal maturation of long-lasting activity-dependent synaptic plasticity in the hippocampus. Biol. Bulletin. 219:81-99.

Dumas, T.C. (2010) Postnatal alterations in induction threshold and expression magnitude of long-term potentiation and long-term depression at hippocampal synapses. Hippocampus. Nov. [EPub ahead of print].

Dumas, T.C. & Rudy, J.W. (2010) Development of the Hippocampal Memory System: Creating Networks and Modifiable Synapses. In Handbook of developmental and Comparative Neuroscience: Epigenetics, Evolution, & Behavior. Oxford University Press.

Sarkar, S, A Dong, and JS Gero. “Learning symbolic formulations in design: Syntax, semantics, and knowledge reification.” AI EDAM-ARTIFICIAL INTELLIGENCE FOR ENGINEERING DESIGN ANALYSIS AND 24, no. 1 (February 2010): 63-85.

Tsai, JJH, and JS Gero. “A qualitative energy-based unified representation for buildings.” AUTOMATION IN CONSTRUCTION 19, no. 1 (January 2010): 20-42.

Unsong Oh, Masahiro Fujita, Vasiliki N. Ikonomidou, Iordanis E. Evangelou, Eiji Matsuura, Erin Harberts, Joan Ohayon, Victor W. Pike, Yi Zhang, Sami S. Zoghbi, Robert B. Innis, Steven Jacobson, Translocator Protein PET Imaging for Glial Activation in Multiple Sclerosis, accepted, J Neuroimmune Pharmacol (2010).

Giuseppe Bomboi, Vasiliki N. Ikonomidou, Stefano Pellegrini, Susan K. Stern, Antonio Gallo, Sungyoung Auh, Iordanis E. Evangelou, Jhalak Agarwal, Clelia Pellicano, Joan M. Ohayon, Fredric K. Cantor, Mary Ehrmantraut, Henry F. McFarland, Robert L. Kane, Francesca Bagnato, “Quality and quantity of diffuse and focal white matter disease and cognitive disability of patients with Multiple Sclerosis”, accepted, Journal of Neuroimaging (2010).

Francesca Bagnato, Zeena Salman, Robert Kane, Sungyoung Auh, Fredric K Cantor, Mary Ehrmantraut, Antonio Gallo, Vasiliki N Ikonomidou, Joan Ohayon, Clelia Pellicano, Susan K Stern, Henry F McFarland, “T1 cortical hypointensities and their association with cognitive disability in Multiple Sclerosis”, Multiple Sclerosis 16(10):1203-12 (2010).

Clelia Pellicano, Antonio Gallo, Xiaobai Li, Vasiliki N. Ikonomidou, Iordanis E. Evangelou, Joan M. Ohayon, Susan K. Stern, Mary Ehrmantraut, Fredric Cantor, Henry F. McFarland, Francesca Bagnato, “Cortical atrophy is related to fatigue in patients with Multiple Sclerosis”, Archives of Neurology 67(4):447-53 (2010).

Kalbfleisch, M.L. (2010). Potential constructs and cognitive components in design creativity: Paradigms from educational psychology and neuroscience. In Gero, J. (ed.), Studying Design Creativity. Springer Science.

Kalbfleisch, M.L. and Nissen, M.E. (2010). Extending Hypothesis Testing of Edge Organizations Using Functional Magnetic Resonance Imaging During ELICIT. Proceedings International Command & Control Research & Technology Symposium, Santa Monica, CA.

Kalbfleisch, M.L (2010). KIDLAB’s STORY Program: A Transdisciplinary Model for Scientific Literacy and Community Involvement in Developmental Neuroimaging Research. New Horizons for Learning Quarterly Journal, Johns Hopkins University School of Education, Baltimore, MD

Pardini M, Guida S, Primavera A, Krueger F, Cocito L, Gialloreti LE. Amisulpride vs. fluoxetine treatment of chronic fatigue syndrome: a pilot study. European Neuropsychopharmacology 2010 Nov 26; [Epubahead of print].
Landgraf S, van der Meer E, Krueger F. Cognitive resource allocation for neuronal activity underlying mathematical cognition: A Multi-Method Study. The International Journal of Mathematics Education 2010; 42(6): 579-590.

Preusse F, van der Meer E, Ullwer D, Brucks M, Krueger F, Wartenburger I. Long-term characteristics of analogical processing in high-school students with high fluid intelligence. An fMRI study. The International Journal of Mathematics Education 2010; 42(6): 635-647.

Gozzi M, Zamboni G, Krueger F, Grafman J. Interest in politics modulates neural activity in the amygdala and ventral striatum. Human Brain Mapping 2010; 31(11): 1763-1771.

Strenziok M, Krueger F, Pulaski SJ, Openshaw AE, Zamboni G, van der Meer E., Grafman J. Lower lateral orbitofrontal cortex density associated with more frequent exposure to television and movie violence in male adolescents. Journal of Adolescent Health 2010: 1-3.

Zamboni G, Krueger F, Knutson KM, Grafman J, Huey DE. Anosognosia for behavioral disturbances in frontotemporal dementia and corticobasal syndrome: a voxel-based morphometry study. Dementia and Geriatric Cognitive Disorders 2010; 29(1): 88-96.

Krueger F*, Knutson K*, Koenigs M, Hawley A, Escobedo J, Vasudeva V, Adolphs R, Grafman J. Behavioral norms for condensed moral vignettes. Social Cognitive and Affective Neuroscience 2010; 5(4): 378-384.
*Authors contributed equally to this work.

Pardini M, Krueger F, Raymont V, Grafman J. Ventromedial prefrontal cortex modulates fatigue after penetrating traumatic head injury. Neurology 2010; 74:749-754.

Raymont V, Salazar AM, Lipsky R, Goldman D, Tasick G, Grafman J. 2010. Correlates of posttraumatic epilepsy 35 years following combat brain injury.Neurology. 75:224-229

Tian F, Marini AM, Lipsky RH. 2010. Effects of histone deacetylase inhibitor Trichostatin A on epigenetic changes and transcriptional activation of Bdnf promoter 1 by rat hippocampal neurons. Ann N Y Acad Sci. 1199:186-193

Copley, S.D., E. Smith, and H.J. Morowitz. “The Emergence of Sparse Metabolic Networks.” Journal of Cosmology 10 (August 2010): 3345-3361.

Morowitz, H.J., V. Srinivasan, and E. Smith. “Ligand Field Theory and The Origin of Life.” Biological Bulletin, no. 219 (2010): 1-6.

Morowitz, H.J., Schmitz-Moorman, N. & Salmon, SJ, J., 2011. Teilhard’s Two Energies. In J. Salmon, SJ & J. Farina, eds. The Legacy of Pierre Teilhard de Chardin. New York: Paulist Press, p. Chapter 9.

Cooper, David, James Gentle, Ernest Barreto, and James Olds. “Synchronized changes to relative neuron populations in postnatal human neocortical development.” Cognitive Neurodynamics 4, no. 2 (June 1, 2010): 151-163.

Parasuraman, R., & Manzey, D. (2010). Complacency and bias in human use of automation: An attentional integration. Human Factors, 52(3), 381-410

Rovira, E., & Parasuraman, R. (2010). Transitioning to future air traffic management: Effects of imperfect conflict-probe automation on controller attention and performance. Human Factors, 52(3), 412-425.

Reinvang, I., Deary, I. J., Fjell, A. M., Steen, V. M., Espeseth, T., & Parasuraman, R. (2010). Neurogenetic effects on cognition in aging brains: A window of opportunity for intervention? Frontiers in Aging Neuroscience, 2, doi: 10.3389/fnagi.2010.00143.

Fedota, J., & Parasuraman, R. (2010). Neuroergonomics and human error.Theoretical Issues in Ergonomics Science, 11(5), 402-421.

Fu, S., Fedota, J., Greenwood, P. M., & Parasuraman, R. (2010). Early interaction between perceptual load and involuntary attention: an event-related potential study.Neuroscience Letters, 468, 68-71.

Fu, S., Fedota, J., Greenwood, P. M., & Parasuraman, R. (2010). Dissociation of visual C1 and P1 components as a function of attentional load: An event-related potential study. Biological Psychology, 85(1), 171-178.

Helton, W., Warm, J., Tripp, L., Matthews, G., Parasuraman, R., & Hancock, P. A. (2010). Cerebral lateralization of vigilance: A function of task difficulty. Neuropyschologia, 48, 1683-1688.

Safford, A.S., Hussey, E.A., Parasuraman, R., & Thompson, J.C. (2010). Object-based attentional modulation of biological motion processing: Spatiotemporal dynamics using fMRI and EEG. Journal of Neuroscience, 30(27), 9064-9073.

Squire, P. N., Barrow, J. H., Smith, C. F., Durkee, K., Moore, J. C., & Parasuraman, R. (2010). Runway Incursion Monitoring, Detection and Alerting System (RIMDAS): A proposed system design for reducing runway incursions. Ergonomics in Design, 18(2), 13-17.

Squire, P. N., & Parasuraman, R. (2010). Effects of automation and task load on task switching during human supervision of multiple semiautonomous robots in a dynamic environment. Ergonomics, 53(8), 951-961.

Boquete, L, JM Rodriguez-Ascariz, I Artacho, J Cantos-Frontela, and N Peixoto.“Dynamically Programmable Electronic Pill Dispenser System.” JOURNAL OF MEDICAL SYSTEMS 34, no. 3 (June 2010): 357-366.

Synchronized Changes to Relative Neuron Populations in Postnatal Human Neocortical Development. Cognitive Neurodynamics 4, 151-163 (2010) David L. Cooper, James E. Gentle, Ernest Barreto, and James L. Olds

Tsvetovat, M. and N. Kabbani. On dopamine, social rewards and formation of social net- works. In Proceedings of 2011 Sunbelt Conference on Social Network Analysis (Upcoming, 2011).

Tsvetovat, M. and D. Maxwell. Quorum analytics: Machine-assisted collaborative capture of qualitative social network data. In Proceedings of 2010 Sunbelt Conference on Social Network Analysis (2010).

Tsvetovat, M., A. Geller, and A. Berea. Kinmason: Modeling kinship networks in pakistan’s rural north-west province. In Proceedings of 2010 Sunbelt Conference on Social Network Analysis (2010).

2009

Komendantov A., Ascoli G.: Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. J Neurophys., 101:1847-66(2009).

Hemond P., Migliore M., Ascoli G., Jaffe D.: The membrane response of CA3 pyramidal neurons near rest: heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. Neuroscience, 160:359-70 (2009).

Ascoli G., Brown K., Calixto E., Card P., Barrionuevo G.: Quantitative morphometry of electrophysiologically identified CA3b interneurons reveals robust local geometry and distinct cell classes. J. Comp. Neurol., 515:677-95 (2009).

Ferrante M., Migliore M., Ascoli G.: Feed-forward inhibition as a buffer of the neuronal input-output relation. Proc. Natl. Acad. Sci. USA, 106:18004-9 (2009).

Ascoli G., Halavi M.: Neuroinformatics. In: Squire LR (ed.) Encyclopedia of Neuroscience, volume 6, pp. 477-484. Oxford: Academic Press (2009).

Hjorth J, Blackwell KT, Kotaleski JH. Gap junctions between striatal fast-spiking interneurons regulate spiking activity and synchronization as a function of cortical activity. J Neurosci. 2009 Apr 22;29(16):5276-86.

Butler, A. B. 2009a Evolution of vertebrate brains. In: Squire LR (ed.), Encyclopedia of Neuroscience 4: 57-66. Oxford: Academic Press.

Butler, A. B. 2009b Homology and homoplasy. In: Squire LR (ed.), Encyclopedia of Neuroscience 4: 1-5. Oxford: Academic Press.

Butler, A. B. 2009c Thalamus: evolution in vertebrates. In: Squire LR (ed.), Encyclopedia of Neuroscience 9: 955-962. Oxford: Academic Press.

Butler, A. B. 2009d The triune brain concept of Paul MacLean: A comparative, evolutionary perspective. In: Squire LR (ed.), Encyclopedia of Neuroscience 9: 1185-1193. Oxford: Academic Press.

Butler, A. B. 2009a Evolution of vertebrate brains. In: Squire LR (ed.), Encyclopedia of Neuroscience 4: 57-66. Oxford: Academic Press.

Butler, A. B. 2009b Homology and homoplasy. In: Squire LR (ed.), Encyclopedia of Neuroscience 4: 1-5. Oxford: Academic Press.

Butler, A. B. 2009c Thalamus: evolution in vertebrates. In: Squire LR (ed.), Encyclopedia of Neuroscience 9: 955-962. Oxford: Academic Press.

Butler, A. B. 2009d The triune brain concept of Paul MacLean: A comparative, evolutionary perspective. In: Squire LR (ed.), Encyclopedia of Neuroscience 9: 1185-1193. Oxford: Academic Press.

Butler, A. B. 2009e Evolution of the diencephalon. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1342-1346.

Butler, A. B. 2009f Evolution of the dorsal thalamus. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1346-1351.

Butler, A. B. 2009g Evolution and the concept of homology. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1208-1212.

Butler, A. B. 2009h Evolution of the somatosensory system in nonmammalian vertebrates. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1419-1421.

Butler, A. B. 2009i Evolution of brain at the invertebrate-vertebrate transition. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1236-1240.

Butler, A. B. 2009j Synopsis: Brain evolution. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 462-472.

Shimizu, T., Patton, T. B., Szafranski, G., and Butler, A. B. 2009 Evolution, of the visual system: in reptiles and birds. In: Encyclopedic Reference of Neuroscience, M. D. Binder, N. Hirokawa, and U. Windhorst (eds.), New York: Springer, pp. 1466-1472.

Sforza D, Putman CM, Cebral JR, “Hemodynamics of Cerebral Aneurysms”, Ann. Review of Fluid Mechanics, 41: 91-107, 2009.

Cebral, J.R. “Progress in Computational Fluid Dynamics for Bioengineering Modelling.”International Journal of Computational Fluid Dynamics 23, no. 8 (2009): 567-568.

Castro M, Putman C, Radaelli A, Frangi A, Cebral JR, “Hemodynamics and rupture of terminal cerebral aneurysms”, Acad Radiol, 16(10): 1201-1207, 2009 .

Cebral JR, Putman CM, Alley M, Hope T, Bammer R, Calamante F, “Hemodynamics in Normal Cerebral arteries: qualitative comparison of 4D phase-contrast magnetic resonance and image-based computational fluid dynamics”, J. Eng. Math, Special Issue on Mathematical Modeling in Health and Medicine, 64(4): 367-378, 2009.

Appanaboyina S, Mut F, Putman CM, Cebral JR, “Simulation of intracranial aneurysm stenting: techniques and challenges”, CMAME 198 (45-46): 3567-3582, 2009 (DOI 10.1016/j.cma.2009.01.017).

Chien A, Castro MA, Tateshima S, Sayre J, Cebral J, Viñuela F, “Quantitative hemodynamic analysis of brain aneurysms at different locations”, AJNR 30(8): 1507-1512, 2009 (DOI: ajnr.A1600v1-0).

Chien A, Tateshima S, Sayre J, Castro M, Cebral JR, Viñuela F, “Patient-specific hemodynamic analysis of small internal carotid artery-ophthalmic artery aneurysms”, Surg Neurol (PMID: 19329152), 2009.

Castro MA, Putman CM, Sheridan M, Cebral JR, “Hemodynamic patterns of anterior communicating artery aneurysms: a possible association with rupture”, AJNR 30(2): 297-302 (PMID: 19131411), 2009.

Cebral JR, Hendrickson S, Putman CM, “Hemodynamics in a lethal basilar artery aneurysm just before its rupture”, AJNR 30: 95-98, (PMID: 18818279), 2009.

Cioffi-Revilla, C. “Modelling Deterrence in Cyberia.” In Modelling Cyber Security: Approaches, Methodology, Strategies, edited by U. Gori, 125-131. Amsterdam and Washington, DC: IOS Press, 2009.

Cioffi-Revilla, C. “Simplicity and Reality in Computational Modeling of Politics.”Computational and Mathematical Organization Theory 15, no. 1 (March 2009): 26-46.

Cioffi-Revilla, C, and P.P. Romero. “Modeling Uncertainty in Adversary Behavior: Attacks in Diyala Province, Iraq, 2002-2006.” Studies in Conflict & Terrorism 32, no. 3 (2009): 253-276.

Iyer, E.P.R., S.C. Iyer, M. J. Sulkowski, and D.N. Cox. “Isolation and Purification of Drosophila Peripheral Neurons by Magnetic Bead Sorting.” Journal of Visualized Experiments, no. 34 (12, 2009).

Cressman, J., G. Ullah, J. Ziburkus, S. Schiff, and E. Barreto. “The Influence of Sodium and Potassium Dynamics on Excitability, Seizures, and the Stability of Persistent States: I. Single Neuron Dynamics.” Journal of Computational Neuroscience 26, no. 2 (April 1, 2009): 159-170.

Ullah, G., J. Cressman Jr., E. Barreto, and S. Schiff. “The Influence of Sodium and Potassium Dynamics on Excitability, Seizures, and the Stability of Persistent States: II. Network and Glial Dynamics.” Journal of Computational Neuroscience 26, no. 2 (April 1, 2009): 171-183.

Castle, C.J.E., A.T. Crooks, M.J. de Smith, M.F. Goodchild, and P.A. Longley. “Geocomputational Methods and Modelling.” In Geospatial Analysis: A Comprehensive Guide to Principles, Techniques and Software Tools, edited by M.J. de Smith, M.F. Goodchild, and P.A. Longley, 445-519. 3rd ed. Winchelsea, UK: The Winchelsea Press, 2009.

Hudson-Smith, A., and A.T. Crooks. “The Renaissance of Geographic Information:
Neogeography, Gaming and Second Life.” In Virtual Geographic Environments, edited by H. Lin and M. Batty, 25-36. Beijing, PRC: Science Press, 2009.

Crooks, A.T., A. Hudson-Smith, and J. Dearden. “Agent Street: An Environment for Exploring Agent-based Models in Second Life.” Journal of Artificial Societies and Social Simulation 12, no. 4 (2009).

Hudson-Smith, A., A.T. Crooks, M. Gibin, R. Milton, and M. Batty. “Neogeography and Web 2.0: Concepts, Tools and Applications.” Journal of Location Based Services 3, no. 2 (2009): 118-145.

Masacci, A.P., D. Smith, A.T. Crooks, and M. Batty. “Random Planar Graphs and the London Street Network.” The European Physical Journal B 71, no. 2 (2009): 259-271.

Hudson-Smith, A., M. Batty, A.T. Crooks, and R. Milton. “Mapping Tools for the Masses: Web 2.0 and Crowdsourcing.” Social Science Computer Review 27, no. 4 (2009): 524-538.

Gero, J.S. and U. Kannengiesser. “Understanding Innovation as a Change of Value Systems.” In Growth and Development of Computer-Aided Innovation, edited byR. Tan, G. Gao and N. Leon, 249-257. Springer, 2009.

Kan, J.W.T. and J.S. Gero. “Using the FBS Ontology to Capture Semantic Design Information in Design Protocol Studies.” In About: Designing. Analysing Design Meetings,edited by J.McDonnell and P. Lloyd, 213-229.CRC Press, 2009.

Kannengiesser, U. and J.S. Gero. “An Ontology of Computer-Aided Design.” In Computer-Aided Design and other Computing Research Developments, edited by C.M. De Smet and J.A. Peeters, 1-25. Nova Science Publishers, 2009.

Peng, W. and J.S. Gero. “Concept Formation in Scientific Knowledge Discovery from a Constructivist View.” In Scientific Data Mining and Knowledge Discovery: Principles and Foundations,edited by M.M. Gaber 91-110.Springer, 2009.

Reffat, R. and J.S. Gero. “Life Cycle Modelling and Design Knowledge Development in Virtual Environments.” In Technology, Design and Process Innovation in the Built Environment,edited byP. Newton, K. Hampsonand R. Drogemuller, 393-406. Spon, 2009.

Gero, J.S., and W. Peng. “Understanding Behaviors of a Constructive Memory Agent: A Markov Chain Analysis.” Knowledge-Based Systems 22, no. 8 (December 2009): 610-621.

Gero, J.S., and G.J. Smith. “Context, Situations, and Design Agents.” Knowledge-Based Systems 22, no. 8 (December 2009): 600-609.

Sarkar, S., A. Dong, and J.S. Gero. “Design Optimization Problem Reformulation Using Singular Value Decomposition.” Journal of Mechanical Design 131, no. 8 (August 2009).

F. Tecuapetla, T. Koos, J. Tepper, N. Kabbani, M. Yeckel. “Differential Dopaminergic of Neostriatal Synaptic Connections of Striatopallidal Axon Collaterals.” Journal of Neuroscience, 29(28) (Jul 15 2009): 8977-90.

Kalbfleisch, M.L. “The Neural Plasticity of Giftedness.” In International Handbook on Giftedness, 275-293. Springer Science, 2009.

Kalbfleisch, M.L. “Preface to Embodied Minds and Dancing Brains: New Opportunities for Research in Mathematics Education.” In Theories of Mathematics Education, edited by B. Sriraman and L. English. Springer, 2009.

Krueger, F., A. Barbey, K. McCabe, M. Strenziok, G. Zamboni, J. Solomon, V. Raymont, and J. Grafman. “The Neural Bases of Key Competencies of Emotional Intelligence.” PNAS106, no. 52 (2009).

Tian, F., X. Hu, X. Wu, H. Jiang, H. Pan, A.M. Marini, and R.H. Lipsky. “Dynamic Chromatin Remodeling Events in Hippocampal Neurons are Associated with NMDA Receptor-mediated Activation of Gene Promoter 1.” Journal of Neurochemistry 109, no. 5 (6, 2009): 1375-1388.

Lencz, T., R.H. Lipsky, P. DeRosse, K.E. Burdick, J.M. Kane, and A.K. Malhotra. “Molecular Differentiation of Schizoaffective Disorder from Schizophrenia using BDNF Haplotypes.” The British Journal of Psychiatry 194, no. 4 (April 1, 2009): 313-318.

Roecklein, K.A., K.J. Rohan, W.C. Duncan, M.D. Rollag, N.E. Rosenthal, R.H. Lipsky, and I. Provencio. “A Missense Variant (P10L) of the Melanopsin (OPN4) Gene in Seasonal Affective Disorder.” Journal of Affective Disorders 114, no. 1-3 (April 2009): 279-285.

Blondeau, N., C. Nguemeni, D.N. Debruyne, M. Piens, X. Wu, H. Pan, X. Hu, C. Gandin, R.H. Lipsky et.al. “Subchronic Alpha-Linolenic Acid Treatment Enhances Brain Plasticity and Exerts an Antidepressant Effect: A Versatile Potential Therapy for Stroke.”Neuropsychopharmacology 34, no. 12 (July 29, 2009): 2548-2559.

Morowitz, H.J., V. Srinivasan, and E. Smith. “Revolution in Organic Chemistry and Its Implication in Biogenesis.” Complexity 14, no. 6 (August 2009): 7-8.

Srinivasan, V., and H.J. Morowitz. “Analysis of the Intermediary Metabolism of a Reductive Chemoautotroph.” Biological Bulletin 217, no. 3 (December 2009): 222-232.

Trefil, J., H.J. Morowitz, and E. Smith. “The Origin of Life a Case is Made for the Descent of Electrons.” American Scientist 97, no. 3 (June 2009): 206-213.

Srinivasan, V., and H.J. Morowitz. “The Canonical Network of Autotrophic Intermediary Metabolism: Minimal Metabolome of a Reductive Chemoautotroph.” Biological Bulletin 216, no. 2 (April 2009): 126-130.

Olds, J.L. “A Plea for Basic Science.” Biological Bulletin 217, no. 1 (August 2009): 1-1.

Fu, S.M, Y.X. Huang, Y.J. Luo, Y. Wang, J. Fedota, P.M .Greenwood, and R. Parasuraman. “Perceptual Load Interacts with Involuntary Attention at Early Processing Stages: Event-Related Potential Studies.” Neuroimage 48, no. 1 (October 15, 2009): 191-199.

Greenwood, P.M., R. Sundararajan, M.K. Lin, R. Kumar, K.J .Fryxell, and R. Parasuraman. “Both a Nicotinic Single Nucleotide Polymorphism (SNP) and a Noradrenergic SNP Modulate Working Memory Performance when Attention is Manipulated.” Journal of Cognitive Neuroscience 21, no. 11 (November 2009): 2139-2153.

Jiang, Y., Y.J. Luo, and R. Parasuraman. “Neural Correlates of Age-related Reduction in Visual Motion Priming.” Aging Neuropsychology and Cognition 16, no. 2 (2009): 164-182.

Negash, S., P.M. Greenwood, T. Sunderland, R. Parasuraman, Y.E. Geda, D.S. Knopman, B.F. Boeve, R.J. Ivnik, R.C. Petersen, and G.E. Smith. “The Influence of Apolipoprotein E Genotype on Visuospatial Attention Dissipates After Age 80.” Neuropsychology 23, no. 1 (January 2009): 81-89.

Ortigue, S., J.C. Thompson, R. Parasuraman, and S.T. Grafton. “Spatio-Temporal Dynamics of Human Intention Understanding in Temporo-Parietal Cortex: A Combined EEG/fMRI Repetition Suppression Paradigm.” PLOS One 4, no. 9 (September 11, 2009).

Parasuraman, R., K.A. Cosenzo, and E. De Visser. “Adaptive Automation for Human Supervision of Multiple Uninhabited Vehicles: Effects on Change Detection, Situation Awareness, and Mental Workload.” Military Psychology 21, no. 2 (2009): 270-297.

Parasuraman, R., E. de Visser, E. Clarke, W.R .McGarry, E. Hussey, T. Shaw, and J.C .Thompson. “Detecting Threat-Related Intentional Actions of Others: Effects of Image Quality, Response Mode, and Target Cuing on Vigilance.” Journal of Experimental Psychology-Applied 15, no. 4 (December 2009): 275-290.

Shaw, T.H., J.S. Warm, V. Finomore, L. Tripp, G. Matthews, E. Weiler, and R. Parasuraman. “Effects of Sensory Modality on Cerebral Blood Flow Velocity during Vigilance.” Neuroscience Letters 461, no. 3 (September 15, 2009): 207-211.

Warm, J.S., G. Matthews, and R. Parasuraman. “Cerebral Hemodynamics and Vigilance Performance.” Military Psychology 21 (2009): 75-100.

Pereira, M.G., S. Minnikanti, S. Jaraiedi, C.M. Costa Neto, and N. Peixoto. “In Vivo Electrochemical Characterization and Inflammatory Response of Multiwalled Carbon Nanotube-based Electrodes in the Hippocampus.” Epilepsy and Behavior 14 (2009): 94.

Boquete, L., J. Rodriguez-Ascariz, I. Artacho, J. Cantos-Frontela, and N. Peixoto. “Dynamically Programmable Electronic Pill Dispenser System.” Journal of Medical Systems34, no. 3 (June 1, 2010): 357-366.

Minnikanti, S., P. Skeath, and N. Peixoto. “Electrochemical Characterization of Multi-Walled Carbon Nanotube Coated Electrodes for Biological Applications.” Carbon 47, no. 3 (March 2009): 884-893.

Sunderam, S., N. Chernyy, N. Peixoto, J.P. Mason, S.L. Weinstein, S.J. Schiff, and B.J. Gluckman. “Seizure Entrainment with Polarizing Low Frequency Electrical Fields in a Chronic Animal Epilepsy Model.” Journal of Neural Engineering. 6 (2009): 046009.

Sikdar, S., J.P. Shah, T. Gebreab, R.H. Yen, E. Gilliams, J. Danoff, and L.H. Gerber. “Novel Applications of Ultrasound Technology to Visualize and Characterize Myofascial Trigger Points and Surrounding Soft Tissue.” Archives of Physical Medicine and Rehabilitation 90, no. 11 (November 2009): 1829-1838.

Sikdar, S., S. Vaidya, M. Dighe, O. Kolokythas, J.H. Kim, K.W. Beach, and Y. Kim. “Doppler Vibrometry: Assessment of Arterial Stenosis by Using Perivascular Tissue Vibrations without Lumen Visualization.” Journal of Vascular and Interventional Radiology 20, no. 9 (September 2009): 1157-1163.

Zhuang, B., V. Shamdasani, S. Sikdar, R. Managuli, and Y.M. Kim. “Real-Time 3-D Ultrasound Scan Conversion Using a Multicore Processor.” Ieee Transactions on Information Technology in Biomedicine 13, no. 4 (July 2009): 571-574.

Sanders, E., P. So, and E. Barreto. “Noninvertibility.” Scholarpedia 4, no. 8 (2009):

Tsvetovat, M. and Robbins, S. “Follow the Money: the Network of Political Organizations and Candidates in 2000.” In Interest Groups and Lobbying, edited by McGrath. Vol. 1. Edwin Mellen Press, 2009.

Tsvetovat, M. “Describing Agent Societies: A Declarative Semantics”,In Semantics of Agent-Based Systems, edited by V. Dignum, IGI Global, 2009.

2008

Hemond P., Epstein D., Migliore M., Ascoli G., Jaffe D.: Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. Hippocampus. 18:411-24 (2008).

Scorcioni R., Polavaram S., Ascoli G.: L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies. Nature Prot.3:866-76 (2008).

Donohue D., Ascoli G.: A comparative computer simulation of dendritic morphology. PLoS Comput. Biol. 4(5): e1000089 (2008).

Li X., Ascoli G.: Effects of synaptic synchrony on the neuronal input/output relationship.Neural Computation. 20:1717-31 (2008).

Ascoli G., Alonso L., Anderson S., Barrionuevo G., Benavides-Piccione R., Burkhalter A., Buzsaki G., Cauli B., DeFelipe J., Fairén A., Feldmeyer D., Fishell G., Fregnac Y., Freund T.F., Karube F., Gardner D., Gardner E., Goldberg J., Helmstaedter M., Hestrin S., Kisvarday Z., Lambolez B., Lewis D., Marin O., Markram H., Muñoz A., Packer A., Petersen C., Rockland K., Rossier J., Rudy B., Somogyi P., Staiger J.F., Tamas G., Thomson A., Toledo M., Wang Y., West D., Yuste R.: Petilla Terminology: Nomenclature of features of GABAergic interneurons of the cerebral cortex. Nature Rev. Neurosci. 9:557-68 (2008).

Ferrante M., Blackwell K., Migliore M., Ascoli G.: Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets. Curr. Med. Chem. 15:2456-71(2008).

Scorcioni R., Hamilton D., Ascoli G.: Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit. Neural Netw., 21:1153-63(2008).

Brown K., Gillette T., Ascoli G.: Quantifying neuronal size: Summing up trees and splitting the branch difference. Sem. Cell Dev. Biol., 19:485-93 (2008).

Gardner D., Akil H., Ascoli G., Bowden D., Bug W., Donohue D, Goldberg D., Grafstein B., Grethe J., Gupta A., Halavi M., Kennedy D., Marenco L., Martone M., Miller P., Müller H.-M., Robert A., Shepherd G., Sternberg P., Van Essen D., Williams R.: The Neuroscience Information Framework: a data and knowledge environment for neuroscience.Neuroinformatics, 6:149-60 (2008).

Marenco L., Ascoli G., Martone M., Shepherd G., Miller P.: The pilot NIF LinkOut broker: A web resource to facilitate federated data integration using NCBI identifiers.Neuroinformatics, 6:219-27 (2008).

Bug W., Ascoli G., Grethe J., Gupta A., Fennema-Notestine C., Laird A., Larson S., Rubin D., Shepherd G., Turner J., Martone M.: The NIFSTD and BIRNLex vocabularies: Building comprehensive ontologies for neuroscience. Neuroinformatics, 6:175-94(2008).

Halavi M., Polavaram S., Donohue D., Hamilton G., Hoyt J., Smith K., Ascoli G.: NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF. Neuroinformatics, 6:241-52(2008).

Ascoli G., Samsonovich A.: Science of the conscious mind. Biol. Bull., 215:204-15 (2008).

Komendantov A., Ascoli G.: Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. J Neurophys. Vol. 101 (4), pp. 1847-66 (2009)

E.Barreto (2008) Shadowing. Scholarpedia, 3(1):2243.

E. Barreto, B. Hunt, E. Ott, and P. So. Synchronization in Networks of Networks: The Onset of Coherent Collective Behavior in Interacting Populations of Heterogeneous Oscillators. Physical Review E 77, 036107 (2008).

Blackwell K.T., Farley J. (2008) Hermissenda. Scholarpedia, 3(7):4090

Ferrante M., Blackwell K.T., Migliore M., Ascoli G.A. (2008) Computational Models of Neuronal Biophysics and the Characterization of Potential Neuropharmacological Targets.Current Medicinal Chemistry, 15: 2456-2471

Butler, Ann B. 2008. Brain evolution and comparative neuroanatomy. In: Encyclopedia Of Life Sciences, John Wiley & Sons, Ltd. Chichester, UK, http://www.els.net/ [DOI: 10.1002/9780470015902.a0000088.pub2]. [Update of 2001b article.]

Butler, A. B. 2008. Evolution of brains, cognition, and consciousness. Brain Res. Bull., 75: 442-449.

Butler, A. B. 2008. Evolution of the dorsal thalamus: A morphological-functional review.Thalamus and Related Structures, 2008, 4(1), 35–58. DOI 0.1017/S1472928808000356.

Camelli F, Cebral JR, Löhner R, “Timings of an Unstructured-Grid CFD Code on Common Hardware Platforms and Compilers”, AIAA-2008-0477, 46th Aerospace Sciences Meeting and Exhibit, Reno Nevada, January 7-10, 2008.

Appanaboyina S, Mut F, Löhner R, Escrivano E, Miranda C, Lylyk P, Putman CM, CebralJ.R., “Computational modeling of blood flow in side arterial branches after stenting of intracranial aneurysms”, Int J CFD, 22(10), 669-676, 2008.

Chien A, Tateshima S, Castro M, Sayre J, Cebral J.R., Viñuela F, “Patient-specific flow analysis of brain aneurysms at a single location: comparison of hemodynamic characteristics in small aneurysms”, Med Biol Eng Comput 46(11): 1113-1120, 2008.

Radaelli AG, Ausburger L, Cebral J.R., Ohta M, Rüfenacht DA, Balossino R, Benndorf G, Hose DR, Marzo A, Metcalfe R, Mortier P, Mut F, Reymond P, Socci L, Verhegghe B, Frangi AF, “Reproducibility of haemodynamical simulations in a subject-specific stented aneurysm model – A report on the Virtual Intracranial Stenting Challenge 2007”, J. Biomech., 41(10): 2069-2081, 2008.

Cebral J.R., Castro MA, Putman CM, Alperin N, “Flow-area relationship in internal carotid and vertebral arteries”, Physiol. Meas. 29: 585-594, 2008.

Löhner R, Cebral J.R., Camelli F, Appanaboyina S, Baum JD, Mestreau EL, Soto O, “Adaptive embedded and immersed unstructured grid techniques”, Comp Meth Appl Mech Eng 197: 2173-2197, 2008.

Appanaboyina S, Mut F, Löhner R, Putman CM, Cebral J.R,, “Computational Fluid Dynamics of Stented Intracranial Aneurysms using Adaptive Embedded Unstructured Grids”, Int. J. Num. Methods Fluids, 57(5): 475-493, 2008.

Aubry R, Mut F, Löhner R, Cebral J.R., “Deflated preconditioned conjugate gradient solvers for the pressure-Poisson equation”, J Comp Phys, 227(24):10196-10208, 2008.

Löhner R, Appanaboyina S, Cebral J.R., “Parabolic Recovery of Boundary Gradients”, Comm Num Meth Eng, 24(12), 1611-1615, 2008 (DOI: 10.1002/cnm.1054).

Löhner R, Appanaboyina S, Cebral J.R., “Comparison of Body-Fitted, Embedded and Immersed Solutions of Low Reynolds-Number 3-D Incompressible Flows”, Int J Num Methods Fluids, 57(1): 13-30, 2008 (DOI: 10.1002/fld.1604).

Cioffi-Revilla, Claudio, J. Daniel Rogers, and Maciej Latek. 2008. The MASON HouseholdWorld Model of Pastoral Nomad Societies. In Proceedings of the Second World Congress in Social Simulation, Center for Social Complexity, George Mason University, Fairfax, VA 22030, USA, 14-17 July, 2008.

S.J. Schiff, J.R. Cressman, E. Barreto, and J. Ziburkus. Towards a Dynamics of Seizure Mechanics. In Computational Neuroscience in Epilepsy, I. Soltesz and K. Stanley, eds.
Academic Press, January 14, 2008 (ISBN-10: 0123736498)

G. Ullah, J.R. Cressman, E. Barreto, and S.J. Schiff. The Influence of Sodium and Potassium Dynamics on Excitability, Seizures, and the Stability of Persistent States: II. Network and Glial Dynamics. Journal of Computational Neuroscience Vol. 26:2 (April, 2009; published online 13 December 2008).

Bilda, Z. and Gero, J.S. (2008) Idea development can occur using imagery only during early conceptual designing, in JS Gero and AK Goel (eds), Design Computing and Cognition’08, Springer: 303-320.

Gero, J.S. and Kannengiesser, U. (2008) An ontological account of Donald Schon’s reflection in designing, International Journal of Design Sciences and Technologies 15(2):77-90.

Gero, J.S. and Sosa, R. (2008) Complexity measures as a basis for mass customisation of novel designs, Environment and Planning B 35(1): 3-15.

Kan, J. and Gero, J.S. (2008) Acquiring information from linkography in protocol studies of designers, Design Studies 29(4): 315-337.

Sarkar, S., Dong, A. and Gero, J.S. (2008) Learning symbolic formulations in design optimization, in J.S. Gero and A.K. Goel (eds), Design Computing and Cognition’08, Springer: 533-552.

Sosa, R. and Gero, J.S. (2008) Social structures that promote change in a complex world: The complementary roles of strangers and acquaintances in innovation, Futures 40(6): 577-585.

M. A. Hannan, N. Kabbani, C. D. Paspalas, and R. Levenson. Interaction with Dopamine D2 Receptor Enhances Expression of Transient Receptor Potential Channel 1 at the Cell Surface. Biochim et Biophys Acta. 2008. 1778(4): 974-982.

N.Kabbani. “Proteomics of membrane receptors and signaling”. Proteomics. 2008. 8 (19): 4146-55.

Kalbfleisch, M.L. (2008). Getting to the heart of the brain: Using cognitive neuroscience to explore the nature of human ability and performance. In L.Kalbfleisch (ed.) Special Issue on the Cognitive Neuroscience of Giftedness. The Roeper Review, 30 (3): 162-170.

Samsonovich, A.V., DeJong K.A., Kitsantas, A., Peters, E.E., Dabbagh, N., Kalbfleisch, M.L.(2008). Cognitive Constructor: An Intelligent Tutoring System Based on a Biologically Inspired Cognitive Architecture (BICA). Artificial General Intelligence: Proceedings of the first AGI conference. In P. Wang, B. Boertzel, and S. Franklin (Eds.). Frontiers in Artificial Intelligence and Applications,Volume 171, 311-325. IOS Press.

Samsonovich, A.V., Ascoli, G.A., Morowitz, H., Kalbfleisch, M.L. (2008). A scientific perspective on the hard problem of consciousness. Artificial General Intelligence: Proceedings of the first AGI conference. In P. Wang, B. Boertzel, and S. Franklin (Eds.).Frontiers in Artificial Intelligence and Applications,Volume 171, 493-505. IOS Press.

Olds, J.L. (2008) Science rebooted: what the trend toward on-line collaboration might mean for a journal like The Biological Bulletin. Biol. Bull.
215:1-2

de Visser, E., Horvath, D., & Parasuraman, R. (2008). Adaptive automation enhances human supervision of multiple uninhabited vehicles. In D. de Waard, F. O. Flemisch, B. Lorenz, H. Oberheid, & K. Brookhuis (Eds.) Human Factors for Assistance and Automation. (pp. 285-300). Maastricht, The Netherlands: Shaker Publishing.

Fu, S., Zinni, M., Squire, P. N., Kumar, R., Caggiano, D. M., & & Parasuraman, R. (2008). When and where perceptual load interacts with voluntary visuospatial attention: An event-related potential and dipole modeling study. Neuroimage, 39, 1345-1355.

Parasuraman, R., & Hancock, P. A. (2008). Mitigating adverse effects of workload, stress, and fatigue with adaptive automation. In P. A. Hancock & J. Szalma (Eds.) Performance Under Stress. (pp. 45-57). Burlington, VT: Ashgate.

Parasuraman, R., Sheridan, T. B., & Wickens, C. D. (2008). Situation awareness, mental workload, and trust in automation: Viable, empirically supported cognitive engineering constructs. Journal of Cognitive Engineering and Decision Making, 2, 141-161.

Parasuraman, R, & Wickens, C. D. (2008). Humans: Still vital after all these years of automation. Human Factors, 50, 511-520.

Parasuraman, R., & Wilson, G. F. (2008). Putting the brain to work: Neuroergonomics past, present, and future. Human Factors, 50, 468-474.

Sanquist, T. F., Minsk, B., & Parasuraman, R. (2008). Cognitive engineering in radiation screening for homeland security. Journal of Cognitive Engineering and Decision Making, 2,204-219.

Sanquist, T. F., Doctor, P., & Parasuraman, R. (2008). A threat display concept for radiation detection in homeland security cargo screening. IEEE Transactions on Systems, Man, and Cybernetics. Part C. Applications, 38, 856-860.

Warm, J. S., Parasuraman, R., & Matthews, G. (2008). Vigilance requires hard mental work and is stressful. Human Factors, 50, 433-441.

P. So, B.C. Cotton, and E. Barreto. Synchronization in Interacting Populations of Heterogeneous Oscillators with Time-Varying Coupling. Chaos 18, 037114 (2008).

Ascoli, G. Biomedical research funding: When the game gets tough, winners start to play. BioEssay, 29: 933-936 (2007).

Ascoli, G. (2007). Successful grant fishing in funding droughts. Nature Cell Biology 9(8): 856-857.

Ascoli, G., Donahue, D., Halavi, M.: NeuroMorpho.Org- A central resource for neuronal morphologies. J. Neurosci. 27:9247-51 (2007)

Ascoli, G.: Successes and rewards in sharing digital reconstructions of neuronal morphology. Neuroinformatics. 5: 154-160 (2007).

Berzhanskaya, J. and Ascoli, G. (2007). Computational Neuroanatomy. Scholarpedia.

Duque A., Tepper., Detari, L., Ascoli, G., Zaborszky, L. : Morphological characterization of electrophysiologically identified basal forebrain neurons: cholinergic vs. neuropeptide Y-containing neurons. Brain Struct. Funct., 1:55-73 (2007).

Samsonovich, A., Giorgio Ascoli, and Kenneth DeJong. “Computational Assessment of the ‘Magic’ of Human Cognition.” IEEE Neural Networks 2006 (2007): 1170-77.

Liu, Y., and Giorgio Ascoli. “Value Added by Data Sharing -Long Term Potentiation of Neuroscience Research.” Neuroinofmatics, no. 5 (2007): 143-45.

Löhner, R., Juan R. Cebral, F. Camelli, S. Appanaboyina, J. Baum, E. Mestreau, and O. Soto. “Adaptive Embedded and Immersed Unstructured Grid Techniques.” Arch Comput Methods Eng 14, no. 3 (2007): 279-301.

Millan, D., L. Dempere-Marco, J.M. Pozo, Juan R. Cebral, and A. Frangi. “Morphological Characterization of Intracranial Aneurysms by Using 3d Moment Invatiants.” IEEE Trans Med Imaging 26, no. 9 (2007): 1270-82.

Wood, B.J, J.K Locklin, A. Viswanathan, J. Kruecker, D. Haemerich, Juan R. Cebral, A. Sofer, R. Cheng, E. McCreedy, K. Cleary, M. McAuliffe, N. Glossop, and J. Yanoff. “Technologies for Guidance of Radiofrequency Ablation in the Multimodality Interventional Suite of the Future.” J Vascular Interventional Radiology 18, no. 1 (2007): 9-24.

Cebral, J. R., R. Pergolizzi, et al. (2007). “Computational Fluid Dynamics Modeling of Intracranial Aneurysms: Qualitative Comparison with Conventional Angiography.” Acad Radiol 14(7): 804-813.

Cox, Daniel N. and M. J. Sulkowski (2007). “Turtle, a novel immunoglobulin superfamily member, is required for dendrite morphogenesis in a subset of Drosophila PNS sensory neurons.” Departmental Biology 306(1): 436-437.

N. Kabbani and R. Levenson. A Proteomic Approach to Receptor Signaling: Molecular Mechanisms and Therapeutic Implication Derived from Discovery of the Dopamine D2 Receptor Signalplex. Eur J Pharmacol. 2007. 572 (2-3): 83-93.

N. Kabbani, M.P. Woll, R. Levenson, J.M. Lindstrom, and J.P. Changeux. Intracellular complexes for the b2 subunit of the nicotinic acetylcholine receptor in brain identified by proteomics. Proc Natl Acad Sci. 2007. 104(51): 20570-5.

N. Kabbani. “Protein Interactions in Dopamine Receptor Signaling: From Receptor Complexes to Brain Disease” in Molecular Interactions of G Protein-Coupled Receptors, edited by Francisco Ciruela Alférez. NOVA Science Publishers, 2007. ISBN: 1-60021-915-2.

Gunnthorsdottir, A., D. Houser, and Kevin McCabe. “Disposition, History, and Contributions in Public Goods Experiments.” Journal of Economic Behavior and Organizations 62, no. 2 (2007): 304-15.

McCabe, Kevin, and L. Inglis. “Using Neuroeconomics Experiments to Study Tort Reform.” Frederic Sautet ed., Mercatus Policy Comment 16, November 2007 (2007): 1-20.

Lohrenz, T., Kevin McCabe, C. Camerer, and R. Montague. “Neural Signature of Fictive Learning Signals in a Sequential Investment Learning Task.” Proceedings of the National Academy of Sciences 104 no. 22 (2007): 9493-98.

Rigdon, M., Kevin McCabe, and Vernon Smith. “Sustaining Cooperation in Trust Games.” Economic Journal 117, no. 522 (2007): 991-1007.

Krueger, F., Kevin McCabe, J. Moll, N. Kriegeskorte, R. Zahn, M. Strenziok, A. Heinecke, and J. Grafman. “Neural Correlates of Trust Proceedings of the National Academy of Sciences.” Proceedings of the National Academy of Sciences 104, no. 50 (2007): 20084-89.

Baker J.L. and Olds J.L. (2007) Theta Phase Precession Emerges from a Hybrid Computational Model of a CA3 Pyramidal Cell. J. Cognitive Neurodynamics 1: 237-248

Parasuraman, R., & Espeseth, T. (2007). Genetic and neuroimaging studies of cholinergic and neurotrophic modulation of visual attention. Progress in Natural Science, 17. 7-18.

Miller, C., and Raja Parasuraman. “Designing for Flexible Interaction between Humans and Automation: Delegation Interfaces for Supervisory Control.” Human Factors 49, no. 1 (2007): 57-75.

Helton, W. S., Hollander, T. H., Warm, J. S., Tripp, L. D., Parsons, K., Matthews, G., Dember, W. N., & Parasuraman, R. (2007). The abbreviated vigilance task and cerebral hemodynamics. Journal of Clinical and Experimental Neuropsychology, 29 (5), 545-552.

Parker, Dawn, and D. Munroe. “The Geography of Market Failure: Edge-Erect Externalities and the Location and Production Patterns of Organic Farming.” Ecological Economics 60, no. 4 (2007): 821-33.

Robinson, D., D. Brown, Dawn Parker, P. Scheinemachers, M. Janssen, M. Huigen, H. Wittmer, N. Gotts, P. Promburom, E. Irwin, T. Berger, F. Gatzwiller, and C. Barnaud. “Comparison of Empirical Methods for Building Agent-Based Models in Land-Use Science.” Jounral of Land-Use Science 2, no. 1 (2007): 31-55.

Parker, Dawn. “Revealing ‘Space’ in Spatial Externalities: Edge-Erect Externalities and Spatial Incentives.” Journal of Environmental Economics and Management 54, no. 1 (2007): 84-99.

So, Paul (2007), “Unstable Perdiodic Orbits,” Scholarpedia.

2006

Samsonovich A., Ascoli G.: Morphological homeostasis in cortical dendrites. Proc. Natl. Acad. Sci. USA, 103:1569-1574 (2006).

Ascoli G.: Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nature Rev. Neurosci., 7:318-324 (2006).

Ascoli G., Domenici E., Bertucci C.: Drug binding to Human Serum Albumin: Abridged review of results obtained with High Performance Liquid Chromatography and circular dichroism. Chirality, 18:667-679 (2006).

Li X., Ascoli G.: Computational simulation of the input-output relationship in hippocampal pyramidal cells. J. Comput. Neurosci., 21:191-209 (2006).

Krichmar J., Velasquez D., Ascoli G.: Effects of beta-catenin on dendritic morphology and simulated firing patterns in cultured hippocampal neurons. Biol. Bull., 211:31-43 (2006).

Ascoli G., Scorcioni R.: Neuron and network modeling. In Zaborszky L., Wouterlood, Lanciego J. (Eds.): Tract Tracing Methods, 3rd ed., 604-630, Springer, New York NY (2006).

Ascoli G., McCabe K.: Scarcity begets addiction. Commentary on Lea & Webley’s “Money as tool, money as drug”. Behav. Brain. Sci., 29(2):178 (2006).

Samsonovich A., Ascoli G., DeJong K, Coletti M.: Integrated hybrid cognitive architecture for a virtual roboscout. AAAI Report Cognitive Robotics WS-06-03:129-134 (2006).

Samsonovich A., Ascoli G., DeJong K.: Human-level psychometrics for cognitive architectures. In Smith L., Sporns O., Yu C., Gasser M., Breazeal C., Deak G., Weng J. (Eds.): Proc. 5th Int. Conf. Dev. & Learning ICDL 2006, Bloomington, IN (2006).

Jokubas Ziburkus, John R. Cressman, Ernest Barreto, and Steven J. Schiff.: Interneuron and Pyramidal Cell Interplay During In Vitro Seizure-like Events. Journal of Neurophysiology, Vol. 95, pp. 3948-3954 (2006).

Evelyn Sander, Ernest Barreto, S. Schiff, and P. So.: Dynamics of Noninvertibility in Delay Equations. Discrete and Continuous Dynamical Systems, Supplementary Volume, pp. 768-777 (August 2005).

J. Hellgren Kotaleski, D. Plenz and K.T. Blackwell: Using Potassium Currents to Solve Signal-to-Noise Problems in Inhibitory Feedforward Networks of the Striatum. Journal of Neurophysiology 95:331-341 (2006)

Nicholas Gustafson, Elakkat Gireesh-Dharmaraj, Uwe Czubayko, Kim T. Blackwell, and Dietmar Plenz. (2006) A Comparative Voltage and Current-Clamp Analysis of Feedback and Feedforward Synaptic Transmission in the Striatal Microcircuit In Vitro. Journal of Neurophysiology 95: 737-752

Blackwell K.T. : Subcellular, Cellular, and Circuit Mechanisms Underlying Classical Conditioning in Hermissenda crassicornis. The Anatomical Record (Part B: New ANAT) 289B: 25-37

Blackwell K.T. : An efficient stochastic diffusion algorithm for modeling second messengers in dendrites and spines. Journal of Neuroscience Methods 157; 142-153.

Maria Lindskog, Myungsook Kim, Martin A Wikstrom, Kim T. Blackwell, Jeanette Hellgren Kotaleski. (2006) Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation. PLOS Computational Biology (Sept 2006); Vol 2, Iss 9, e119.

Blackwell, K. T. Ionic currents underlying difference in light response between type A and type B photoceptors. J Neurophsiol. 2006 May; 95 (5) : 3060-72

Gustafson, N., E. Gireesh-Dharmaraj, et al. A Comparitive Voltage and Current-Clamp Analysis of Feedback and Feedforward Synaptic Transmission in the Striatal Microcircuit in Vitro. Journal of Neurophysiology 95 (2006): 737-52 [K. T. Blackwell.]

Butler , Ann B. 2006 The serial transformation hypothesis of vertebrate origins: comment on “The new head hypothesis revisited.” J. Exp. Zool. (Mol. Dev. Evol.), 306B [Epub ahead of print].

Butler , Ann. B. and Rodney M. J. Cotterill 2006 Mammalian and avian neuroanatomy and the question of consciousness in birds. Biol. Bull., 211: 106-127.

Butler , Ann B. 2006 The Dual Elaboration Hypothesis of the Evolution of the Dorsal Thalamus. In L. A. Krubitzer and J. H. Kaas (eds.), Evolution of Nervous System in Mammals. Amsterdam: Elsevier, pp. 517-523.

Castro, M.A., C.M. Putman, and J.R. Cebral, “Computational fluid dynamics modeling of intracranial aneurysms: effects of parent artery segmentation on intra-aneurysmal hemodynamcis”. AJNR, 27: 1703-1709, 2006

Castro MA, Putman CM, Cebral J.R. “Patient-Specific Computational Modeling of Cerebral Aneurysms with Multiple Avenues of Flow from 3D Rotational Angiography Images”, Academic Radiology, 13(7): 811-821, 2006

Cebral, J. R., M. A. Castro, et al. “A Study of Hemodynamics of Anterior Communicating Artery Aneurysms.” Proceedings SPIE Medical Imaging 6143 (2006): 166-75.

Adam Campbell, Annie S. Wu, Keith Garfield, Randall Shumaker, Sean Luke, and Kenneth A. De Jong (2006) Emperical Study on the Effects of Synthetic Social Structures on Teams of Autonomous Vehiles . In Proceedings of International Conference on Networking, Sensing, and Control. Pages 440 – 445.

Elena Popovici and Kenneth De Jong (2006) Sequential Versus Parallel Cooperative Coevolutionary Algorithms for Optimization. In Proceedings of Congress on Evolutionary Computation.

Elena Popovici and Kenneth De Jong (2006) The Effects of Interaction Frequency on the Optimization Performance of Cooperative Coevolution. In Proceedings of Genetic and Evolutionary Computation Conference

Elena Popovici and Kenneth De Jong (2006) The Dynamics of the Best Individuals in Co-Evolution. Natural Computing, 5(3) : 229 – 255

Alexei V. Samsonovich, Giorgia Ascoli, and Kenneth De Jong (2006) Computational Assessment of the ‘Magic’ of Human Congnition. In Proceedings of World Congress on Computational Intelligence

Leonard, C., Eckert, M., Given, B. K., Berninger Virginia and Guinevere Eden. (2006) Individual differences in anatomy predict reading and oral language impairments in children. Brain 129; 3329-3342.

Given, B. K. (2006). Learning styles as theaters of the mind. European Learning Styles International Network Conference Proceedings, Oslo, Norway.

Schiff, S., Kruglikov, S. Chari, S., Rapp, P. Weinstein, S. & Given, B. (July 2006). Fully Optimized Discrimination of Physiological Responses to Auditory Stimuli. CNS: Cognitive Neuroscience Society Proceedings, Edinburgh, UK

Matukumalli LK, Grefenstette J. J., Hyten DL, Choi IY, Cregan PB, and Van Tassell CP (2006). Application of machine learning in SNP discovery. BMC Bioinformatics 7: 4.

M. Basile, R. Lin, N. Kabbani, K. Karpa, M. Kilimann, I. Simpson, and M. Kester. Paralemmin interacts with D3 dopamine receptors: Implications for membrane localization and cAMP signaling. Arch Biochem Biophys. 2006. 446(1): 60-8.

N. Kabbani and R. Levenson. Antipsychotic induced alterations in D2 dopamine receptor interacting proteins in the cortex. Neuroreport. 2006. 17(3): 299-301.

Kalbfleisch, M.L., Van Meter, J.W., Zeffiro, T.A. (2006). The Influences of Task Difficulty and Response Correctness on Neural Systems Supporting Fluid Reasoning. Cognitive Neurodynamics, DOI10.1007/s11571-006-9007-4. ISSN: 1871-4080 (Print) 1871-4099 (Online)

Penberthy, J.K., Kalbfleisch, M.L., Quigg, M., Loboschefski, T., Cox, D., Runyon, C., Kovatchev, B. (2006). Electroencephalographic Profiles of Children with Symptoms of Attention Deficit Hyperactivity Disorder: A Review of the Literature. Current Pediatric Reviews, 2(4), 17-32.

Morowitz, H. “The Origin of Life…Through Chemistry,” National Geographic, March 2006, describing his research and Robert Hazen’s book Genesis.

Morowitz, H. “Closure as a scientific concept and its application to ecosystem ecology and the science of the biosphere,” with J.P. Allen, M. Nelson, and A. Alling, in Science Direct Advances in Space Research 36 (2005), 1305-1311

Morowitz, H. “Ancient genes in contemporary persistent microbial pathogens,” with V. Srinivasan, The Biological Bulletin 210: 1-9, February 2006

Smith, E., H.J. Morowitz, et al. “Experimental search for minimal organisms and the last common ancestor.” Complexity 12, no. 1 (2006).

Morowitz, H. “The Swiss Army Knife of Biological Catalysis,” with V. Srinivasan and E. Smith, in Complexity.

Palkovich, A. 2006 Joe Gay Mound Group. Crematory A Excavations. The 1970s Joe Gay Mound Excavations. In: Illinois Hopewell and Late Woodland Mounds: The Excavations of Gregory Perino. 19501975. Center for American Archaeology Publications, p386388. (with Della C. Cook)

Palkovich, A. 2006 Race. Science and Society. In: Proceedings, TAM 4.
Ray Brown, editor, James Randi Foundation.

Caggiano, D., Jiang, Y., & Parasuraman, R. (2006). Aging and repetition priming for targets and distracters in a working memory task. Aging, Neuropsychology, and Cognition, 13, 1-22.

Espeseth, T. Greenwood, P. M., Reivang, I., Fjell, A. M., Walvhold, K. B., Westlye, E., Lundervold, A., Rootvelt, H., & Parasuraman, R. (2006). Interactive effects of APOE and CHRNA4 on attention and white matter volume in healthy middle-aged and older adults. Cognitive, Affective, and Behavioral Neuroscience,6(1), 31-43. Metzger, U., &

Parasuraman, R. (2006). Effects of automated conflict cueing and traffic density on air traffic controller performance and visual attention in a datalink environment. International Journal of Aviation Psychology, 16, 343-362.

Sheridan, T., & Parasuraman, R. (2006). Human-automation interaction. Reviews of Human Factors and Ergonomics, 1, 89-129.

Sunderam S., Chernyy N., Mason J., Peixoto N., Weinstein S.L., Schiff S.J., Gluckman B.J.. Seizure Modulation with Applied Electric Fields in Chronically Implanted Animals. Proceedings of the 28th IEEE EMBS Annual International Conference, p1612-1615, 2006

Aina Puce, James A. Epling, James C. Thompson and Olivia K. Carrick, Neural responses elicited to face motion and vocalization pairings, Neuropsychologia, Volume 45, Issue 1, The Perception of Emotion and Social Cues in Faces, 2007, Pages 93-106.

2005

Ascoli G. and Grafman J. (Eds.): Consciousness, Mind and Brain (10 chapters, 122 pages). Massom Publisher, Milan, Italy (2005).

Ascoli G. , Atkeson J.: Incorporating anatomically realistic cellular-level connectivity in neural network models of the rat hippocampus. Biosystems, 79:173-181 (2005).

Li Y., Brewer D., Burke R.E., Ascoli G.: Developmental changes in spinal motoneuron dendrites in neonatal mice. J. Comp. Neurol. 483:304-317 (2005).

Samsonovich A., Ascoli G.: Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: a hidden Markov model. Hippocampus 15:166-183 (2005).

Samsonovich A., Ascoli G.: A simple neural network model of the hippocampus suggesting its role in the navigation of memory. Learning & Memory, 12:193-208 (2005).

Scorcioni R., Ascoli G.: Algorithmic reconstruction of complete axonal arborizations in rat hippocampal neurons. Neurocomputing, 65-66:15-22 (2005).

Samsonovich A., Ascoli G.: Algorithmic description of hippocampal granule cell dendritic morphology. Neurocomputing, 65-66:253-260 (2005).

Samsonovich A., Ascoli G.: The conscious self: ontology, epistemology and the mirror quest. Cortex, 41:621-636 (2005).

Donohue D., Ascoli G.: Local diameter fully constrains dendritic size in basal but not apical trees of CA1 pyramidal neurons. J. Comput. Neurosci., 19:223-238 (2005).

Brown K., Donohue D., D’Alessandro G., Ascoli G.: A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics,3:343-360 (2005).

Migliore M., Ferrante M., Ascoli G.: Signal propagation in oblique dendrites of CA1 pyramidal cells. J. Neurophys., In Press (2005).

Samsonovich A., Ascoli G .: Morphological homeostasis in cortical dendrites. Submitted (2005).

Li X., Ascoli G .: Computational simulation of the input-output relationship in hippocampal pyramidal cells. Submitted (2005).

Duque A., Tepper J., Ascoli G., Zaborszky L.: Morphological characterization of electrophysiologically identified basal forebrain neurons: cholinergic vs. neuropeptide Y-containing neurons. Submitted (2005)

Ascoli G. , Domenici E., Bertucci C.: Drug binding to Human Serum Albumin: Abridged review of results obtained with circular dichroism and High Performance Liquid Chromatography. Submitted (2005).

Robert L. Axtell. “The Complexity of Exchange,” 2005, Economic Journal, vol. 115, no. 504 (June): 193-210<

Blackwell K.T. (2005) A New Era in Computational Neuroscience. Neuroinformatics 3: 163-166

The Avian Brain Nomenclature Forum [ Jarvis, E. D., Güntürkün, O., Bruce, L., Csillag, A., Karten, H., Kuenzel, W., Medina, L., Paxinos, G., Perkel, D. J., Shimizu, T., Striedter, G., Wild, J. M., Ball, G. F., Dugas-Ford, J., Durand, S. E., Hough, G. E., Husband, S., Kubikova, L., Lee, D. W., Mello, C. V., Powers, A., Siang, C., Smulders, T. V., Wada, K., White, S. A., Yamamoto, K., Yu, J., Reiner, A., and Butler, A. B.] 2005 Avian brains and a new understanding of vertebrate brain evolution. Nature Rev. Neurosci., 6: 151-159.

Butler , Ann B., Paul R. Manger, Ingemar B. Lindahl, and Peter Århem 2005 Evolution of the neural basis of consciousness: a bird-mammal comparison. BioEssays, 27: 923-936.

Dumas, TC (2005) Developmental regulation of cognitive abilities: modified composition of a molecul ar switch turns on associ ative le arning. Prog Neurobiol 76:189–211.

Theodore C. Dumas. (2005) Late postnatal maturation of excitatory synaptic transmission permits adult-like expression of hippocampal-dependent behaviors.Hippocampus 15:5, 562

A Model of the Effects of Applied Electric Fields on Neuronal Synchronization. The Journal of Computational Neuroscience19 53-70 (2005). Eun-Hyoung Park , Ernest Barreto,Bruce J. Gluckman, Steven J. Schiff, and Paul So

Control of Traveling Waves in Mammalian Cortex. Physical Review Letters94 028103 (2005). Kristen A. Richardson, Steven J. Schiff, and Bruce J. Gluckman.

Grefenstette J.J. , Kim S, Kauffman SA (2005, in press). An analysis of the class of gene regulatory functions implied by a biochemical model. BioSystems.

Doung D and Grefenstette J (2005). SISTER: a Symbolic Interactionist Simulation of Trade and Emergent Roles. Journal of Artificial Societies and Social Simulation 8(1).

A.V. Binda, N.Kabbani, and R. Levenson. Dense core vesicle release from PC12 cells regulated by interaction between the D2 dopamine receptor and calcium activator protein for secretion (CAPS). Biochem Pharmacol. 2005. 69(10): 1451-1461.

N. Kabbani, M. Hannan, and R. Levenson. Unraveling the dopamine receptor signalplex with DRIPs and DRAPs. Curr Proteomics. 2005. 2 (3): 209-224.

B. Blasiole, N.Kabbani, B. Thisse, C. Thisse, V. Canfield, and R. Levenson. The Neuronal Calcium Sensor-1 Gene ncs-1a, is Essential for Semicircular Canal Formation in the Zebrafish Inner Ear. J Neurobiol. 2005. 64(3): 285-97.

Penberthy, J.K., Kalbfleisch, M.L., Quigg, M.L., Loboschefski, T., Kovatchev, B., Cox, D. (2005). Electroencephalographic profiles of children with symptoms of attention deficit hyperactivity disorder. Current Pediatric Reviews (in-press).

Penberthy, J.K., Cox, D., Breton, M., Robeva, R., Kalbfleisch, M.L., Loboschefski, T., Kovatchev, B. (2005). Calibration of ADHD assessments across studies: A meta-analysis tool. Applied Psychophysiology and Biofeedback, 30 (1), 31-51.

Olds, J.L. (2005) The Biological Bulletin-A Message from the Editor 208:1-2

Metzger, U., & Parasuraman, R. (2005). Automation in future air traffic management: Effects of decision aid reliability on controller performance and mental workload. Human Factors, 47(1), 35-49.

Parasuraman, R., Galster, S., Squire, P., Furukawa, H., & Miller, C. (2005). A flexible delegation interface enhances system performance in human supervision of multiple autonomous robots: Empirical studies with RoboFlag. IEEE Transactions on Systems, Man, and Cybernetics. Part A: Systems and Humans, 35(4), 481-493.

Parasuraman, R., Greenwood, P. M., Kumar, R., & Fossella, J. (2005). Beyond heritability: Neurotransmitter genes differentially modulate visuospatial attention and working memory. Psychological Science, 16(3), 200-207.

A Model of the Effects of Applied Electric Fields on Neuronal Synchronization. The Journal of Computational Neuroscience19 53-70 (2005). Eun-Hyoung Park , Ernest Barreto, Bruce J. Gluckman, Steven J. Schiff, and Paul So

Dynamics of Noninvertibility in Delay Equations. Discrete and Continuous Dynamical SystemsSupplement Volume (2005). Evelyn Sander, Ernest Barreto, Steven Schiff, and Paul So

Multivariate Linear Discrimination of Seizures. Clinical Neurophysiology116 545-551 (2005). Jerger, KK, Weinstein, SL, Sauer, T, and Schiff, S.J.

Control of Traveling Waves in Mammalian Cortex. Physical Review Letters94 028103 (2005). Kristen A. Richardson, Steven J. Schiff, and Bruce J. Gluckman

Kathleen M. Carley, Jana Diesner, Maksim Tsvetovat, Jeffrey Reminga “Toward an Interoperable Dynamic Network Analysis Toolkit,”Journal of Decision Support Systems (DSS) Special Issue on Cyberinfrastructure for Homeland Security: Advances in Information Sharing, Data Mining, and Collaboration Systems; accepted for publication in 2005.

Maksim Tsvetovat, Kathleen Carley “Structural Knowledge and Success of Anti-Terrorist Activity: The Downside of Structural Equivalence” Journal of Social Structure (www.joss.org), Volume 6, June 2005

2004

Scorcioni R., Lazarewicz M., Ascoli G.: Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. J. Comp. Neurol. 473:177-193 (2004).

D. Teitelbaum and Robert L. Axtell. “Firm Size Dynamics of Industries: Stochastic Growth Processes, Large Fluctuations, and the Population of Firms as a Complex System”, 2004, published by the U.S. Small Business Administration (NTIS order number: PB2005-101701)

Blackwell K.T. (2004) Paired Turbulence and Light do not Produce a Supralinear Calcium Increase in Hermissenda. J Computational Neuroscience Jul-Aug;17(1):79-97

T.C. Dumas. (2004) Early eyelid opening enhances spontaneous alternation and accelerates the development of perforant path synaptic strength in the hippocampus of juvenile rats, Dev Psychobiol 45, pp. 1–9.

Given, B., Chari S., & Ennis, J. et al. (2004). Differences in low, average, and expert readers as measured by eeg/erps: preliminary findings and challenges of an in-school psycho-physiological research project. American Educational Research Association 2004 Annual Meeting, San Diego, CA. Conference Paper

Khan R, Alkharouf N, Beard H, Chouikha I, Meyer S, Grefenstette J, Knap H, and Matthews B (2004). Microarray analysis of gene expression in soybean roots susceptible to the soybean cyst nematode two days post invasion. Journal of Nematology 36(3):241-248.v

Matukumalli LK, Grefenstette JJ, Sonstegard TS, Van Tassell CP. (2004). EST-PAGE: managing and analyzing EST data. Bioinformatics 20(2), 286-288.

R.Lin, N. Kabbani, A.Binda, V.Canfield, and R.Levenson. “G Protein Coupled Receptor-Protein Interactions”, in the series Receptor Biochemistry and Methodology, edited by David Sibley. John Wiley & Sons, 2004. ISBN: 0471235466

N. Kabbani, A.Jeromin, and R. Levenson. Dynamin-2 associates with the dopamine receptor signalplex and regulates internalization of activated D2 receptors. Cell Signaling. 2004. 16(4):497-503.

Kalbfleisch, M.L . (2004). The functional neural anatomy of talent. The Anatomical Record, 277B (1), 21-36 Olds, J.L.(2004) The Intellectual Property Conundrum for Biosciences. Anat. Rec. 277B:5-9

Olds, J.L.(In Press) Election 2004: The Implications for Biomedical Research. Anat. Rec.

Sprial Waves in Disinhibited Mammalian Neocortex. The Journal of Neuroscience24 9897-9902 (2004). Xiaoying Huang, William C. Troy, Qian Yang, Hongtao Ma, Carlo R. Laing, Steven J. Schiff, and Jian-Young Wu

Analytical Coupling Detection in the Presence of Noise and Nonlinearity. Physical Review E69 017201 (2004). Theoden I. Netoff, Louis M. Pecora and Steven J. Schiff

Maksim Tsvetovat , Kathleen Carley “Modeling Complex Socio-technical Systems using Multi-Agent Simulation Methods” Kunstliche Intelligenz (Artificial Intelligence Journal), Special Issue on Applications of Intelligent Agents, June 2004, vol.2, Verlag.

Maksim Tsvetovat , Kathleen Carley, Katia Sycara “A Multi-Agent Model of Emergence of Market Segmentation” in Modeling Autonomous Agents in a Multi-Agent World IV Lecture Notes on Artificial Intelligence 2004, Springer-Verlag Yves Demazeau, Francisco Garijo (Eds.) (to appear)

2003

Samsonovich A., Ascoli G.: Statistical morphological analysis of hippocampal principal neurons indicates selective repulsion of dendrites from their own cell. J. Neurosci. Res. 71:173-87 (2003).

Ascoli G. : Passive dendritic integration heavily affects spiking dynamics of recurrent networks. Neural Networks, 16:657-663 (2003).

T. Yamashita, K. Kurumatani, Robert L. Axtell and A. Ohuchi. “Group Formation with Split Rule in Social Dilemmas” (with), 2003, in Proceedings of the Second International Joint Conference on Autonomous Agents and Multi-Agent SystemsAAMAS ( Melbourne, Victoria, Australia), ACM Press: N.Y.;

T. Yamashita, Robert L. Axtell, K. Kurumatani and A. Ohuchi. “Investigation of a Mutual Choice Metanorm in Group Dynamics for Solving Social Dilemmas”, 2003, in Multi-Agent Systems for Mass-User Support, K. Kurumatani, S-H. Chen and A. Ohuchi, eds., Lecture Notes in Artificial Intelligence, vol. 3012. Springer: N.Y.;

Robert L. Axtell. “Economics as Distributed Computation,” 2003, in H. Deguchi, K. Takadama and T. Terano, eds., Meeting the Challenge of Social Problems via Agent-Based Simulation, Springer: Tokyo

Blackwell K.T. , Plenz D. (2003) Amplitude distribution and frequency of post-synaptic events in striatal neurons during the down-state. J. Neurosci., 23:9123-32

Mo J.L., Blackwell K.T., (2003) Comparison of Hermissenda type A and type B photoreceptor’s response to light as a function of intensity and duration. J. Neurosci. 23:8020-8.

Butler, Ann B. 2003b Sensory systems and brain evolution across the Bilateria: commonalities and constraints. In: Sensory Processing of the Aquatic Environment, Collin S, Marshall J, eds). Berlin: Springer-Verlag, pp. 375-388.

Given, B. K.(2003). Learning styles/Learning systems instruction. In G. Heidenhain (Ed) Learning beyond boundaries: Fundamental experiences using accelerated learning. Colorado Springs, CO: An International Alliance for Learning Publication, pp. 83-86.

Given, B.K. (2003). Self-Administered, computer-driven, information processing assessment for adult literacy instruction. 21st Century Learning CAL ’03 Conference Proceedings: Abstract book. Queen’s University, Belfast, Northern Ireland. p. 82.

In Vivo Modulation of Hippocampal Epilepiform Activity with Radial Electric Fields.Epilepsia44 768-777 (2003). Kristen A. Richardson, Bruce J. Gluckman, Steven L. Weinstein, Caryn E. Glosch, Jessica B. Moon, Ryder P. Gwinn, Karen Gale, and Steven J. Schiff

Sensitivity of Neurons to Weak Electric Fields. Journal of Neuroscience23 7255-721 (2003). Joseph T. Francis, Bruce J. Gluckman, and Steven J. Schiff

Electric Field Modulation of Synchronization in Neuronal Networks. Neurocomputing52-54 169-175 (2003). Eun-Hyoung Park, Paul So, Ernest Barreto, Bruce J. Gluckman, and Steven J. Schiff

Kim S, Weinstein J.N., and Grefenstette J.J. (2003). Inference of large-scale topology of gene regulation networks by neural nets. Proc. IEEE International Conference of Systems, Man, and Cybernetics, Washington, DC, IEEE, 3969-3975.

Lattner A.D., Kim S., Cervone G., and Grefenstette J.J. (2003). Experimental comparison of symbolic learning programs for the classification of gene network topology models.FGML 2003 Workshop, Annual Meetings of the GI Working Group — Machine Learning, Knowledge Discovery, Data Mining, Karlsruhe, Germany, Oct 2003.

P.O. Koh, A.S. Undie, N.Kabbani, R. Levenson, P. S. Goldman-Rakic, and M. S. Lidow. Up-regulation of neuronal calcium sensor-1 (NCS-1) in the prefrontal cortex of schizophrenic and bipolar patients. Proc Natl Acad Sci. 2003. 100(1): 313-317.

Devan, B.D., Stouffer, E.M., Petri H.L., Mcdonald, R.J. and Olds J.L. (2003) Partial Reinforcement Across Trials Impairs Escape Performance but Spares Place Learning in the Water Maze. Behavioral Brain Research 141:91-104.

Interplay of EEG phase and auditory evoked neural activity. Journal of Neuroscience23: 10122-10127 (2003). Kruglikov, SY and Schiff, S.J.

In Vivo Modulation of Hippocampal Epilepiform Activity with Radial Electric Fields.Epilepsia44 768-777 (2003). Kristen A. Richardson, Bruce J. Gluckman, Steven L. Weinstein, Caryn E. Glosch, Jessica B. Moon, Ryder P. Gwinn, Karen Gale, and Steven J. Schiff

Sensitivity of Neurons to Weak Electric Fields. Journal of Neuroscience23 7255-721 (2003). Joseph T. Francis, Bruce J. Gluckman, and Steven J. Schiff

Electric Field Modulation of Synchronization in Neuronal Networks. Neurocomputing52-54 169-175 (2003). Eun-Hyoung Park , Paul So, Ernest Barreto, Bruce J. Gluckman, and Steven J. Schiff

Synchrony in Globally Coupled Chaotic, Periodic, and Mixed Ensembles of Dynamical Units. A. Pikovsky and Y. Maistrenko (eds.) Synchornization: Theory and Application 175-186 (2003). Edward Ott, Paul So, Ernest Barreto, and Thomas Antonsen

Pattern Formation in a Nonlinear Model for Animal Coats. Journal of Differential Equations191 143-174 (2003). Evelyn Sander and Thomas Wanner The Geometry of Chaos Synchronization. Chaos13 151 (2003). Ernest Barreto, Kresimir Josic, Carlos J. Morales, Evelyn Sander, and Paul So

Smith, V. “Constructivist and Ecological Rationality,” American Economic Review, 93(3), 2003, 465-508. Smith, V. “Positive Reciprocity and Intentions in Trust Games,” with Kevin McCabe and Mary Rigdon, Journal of Economic Behavior and Organization, 52, 2003, 267-275.

Maksim Tsvetovat , Katia Sycara, Yian Chen, James Ying”Customer Coalitions in Electronic Marketplaces” in Agent-Mediated Electronic Commerce III Lecture Notes on Artificial Intelligence 2003, Springer-Verlag Frank Dignum, Ulises Cortes (Eds.)

2002

Ascoli G. (Ed.): Computational Neuroanatomy – Principles and Methods (19 chapters, 468 pages, plus CD-ROM). Humana Press, Totowa, NJ (2002).

Scorcioni R., Bouteiller J., Ascoli G.: A real-scale anatomical model of the dentate gyrus based on single cell reconstructions and 3D rendering of a brain atlas. Neurocomputing, 44-46:629-634 (2002).

Ascoli G. : Neuroanatomical algorithms for dendritic modeling. Network: Comput. Neural Syst. 13:247-260 (2002).

Krichmar J., Nasuto S., Scorcioni R., Washington S., Ascoli G.: Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain Res., 941:11-28 (2002).

Lazarewicz M., Migliore M., Ascoli G.: A new bursting model of CA3 pyramidal cell physiology suggests multiple locations for spike initiation. Biosystems, 67:129-37 (2002).

Robert L. Axtell, Joshua M. Epstein, Jeffrey S. Dean, George J. Gumerman, Alan C. Swedlund, Jason Harburger, Shubha Chakravarty, Ross Hammond, Jon Parker, and Miles Parker. “Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley”, Proceedings of the National Academy of Sciences, vol. 99 (suppl. 3): 7275-7279; synopses by J. Diamond appeared in the 11 October 2002 issue of Natureand by G. Gumerman in the 14 September 2002 issue of Science News

Robert L. Axtell . “Non-Cooperative Dynamics of Multi-Agent Teams,” 2002, inProceedings of the First International Joint Conference on Autonomous Agents and Multi-Agent SystemsAAMAS (Bologna, Italy), M. Gini et al., eds., ACM Press: N.Y.; reprinted inComplexity in Economics, J. Barkley Rosser, ed., Edward Elgar: Cheltenham, UK (2004);

Kotaleski, J.H., Lester D., Blackwell K.T. (2002) Subcellular interactions between parallel fibre and climbing fibre signals in Purkinje cells predict sensitivity of classical conditioning to interstimulus interval. Integrative Physiological and Behavioral Science, 37:265-292

Hellgren Kotaleski J, Blackwell K.T . (2002) Sensitivity to interstimulus interval due to calcium interactions in the Purkinje cell spines, Neurocomputing, 44-46: 13-18

Blackwell K.T. (2002) The effect of intensity and duration on the light induced sodium and potassium currents in the Hermissenda type B photoreceptor. J. Neuroscience.22:4217-4228

Blackwell K.T. (2002) Calcium waves and closure of leak potassium currents caused byGABA stimulation of the type B photoreceptor of Hermissenda crassicornis. J. Neurophysiol. 87: 776-792

Butler, Ann B . 2002b Homology. In: Encyclopedia of Neuroscience (ed. by G. Adelman and B. Smith), Elsevier, New York, in press.

Butler, Ann B. 2002c Homoplasy. In: Encyclopedia of Neuroscience (ed. by G. Adelman and B. Smith), Elsevier, New York, in press.

Butler, Ann.B. and Zoltán Molnár 2002 Development and evolution of the collopallium in amniotes: a new hypothesis of field homology. Brain Res Bull, 57: 475-479.

Butler , Ann B., Zoltán Molnár, and Paul R. Manger 2002 Apparent absence of claustrum in monotremes: implications for forebrain evolution in amniotes. Brain Behav. Evol., 60: 230-240.

Molnár, Zoltán and Ann B. Butler 2002a The corticostriatal junction: A crucial region for forebrain development and evolution. BioEssays, 24: 530-541.

Molnár, Zoltán and Ann B. Butler 2002b Neuronal changes during forebrain evolution in amniotes: an evolutionary developmental perspective. In E.C. Azmitia, J. Defelipe, E.G. Jones, P. Rakic, and C.E. Ribak (eds.), Changing Views of Cajal’s Neuron, Progress in Brain Research, 136, pp. 21-38.

Given, Barbara K. (2002). Teaching to the brain’s natural learning systems. Alexandria, VA: Association for Supervision and Curriculum Development.

Given, B. K.(2002). The overlap between brain research and research on learning style. In M. Valcke and D. Gombeir (Eds.) Learning styles Reliability and validity: Proceedings of the 7th Annual ELSIN Conference proceedings, June 26-28, 2002. Ghent University, Belgium, pp. 173-178.

A. Binda, N.Kabbani, R. Lin, and R. Levenson. D2 and D3 dopamine receptor cell surface localization mediated by interaction with protein 4.1N. Mol Pharmacol. 2002. 62 (3): 507-513.

N. Kabbani, L. Negyessy, R. Lin, P. Goldman-Rakic, and R.Levenson. Interaction with neuronal calcium sensor NCS-1 mediates desensitization of the D2 dopamine receptor. J Neurosci. 2002. 22(19): 8476-8486.

Morowitz, Harold J. The Emergence of Everything. Oxford University Press, 2002,

Morowitz, Harold J . Foreword, Molecular Biology and Pathogenicity of Mycoplasmas, S. Razin and R. Herrmann, eds., Kluwer, 2002.

Devan, B. D., Petri, H. L., Mishkin, M., Stouffer, E. M., Bowker, J. M., Yin, P. B., Buffalari, D. M., & Olds, J. L. (2002). A Room with a view and a polarizing cue: Individual differences in the stimulus control of place navigation and passive latent learning in the water maze. Neurobiol Learn Mem 78 (1):79-99 JUL 2002.

Failure of Single-Unit Neuronal Activity to Differentiate Globus Pallidus internus and externus in Parkinson Disease. The Journal of Neurosurgery97 119 (2002). Steven J. Schiff , M.D., Ph.D., Brian K. Dunagan, and Robert M. Worth, M.D., Ph.D.

Decreased Neuronal Synchronization during Experimental Seizures. The Journal of Neuroscience22 7297 (2002). Theoden I. Netoff and Steven J. Schiff

Limits to the Experimental Detection of Nonlinear Synchrony. Phys. Rev. E , 65 046225 (2002). Paul So, Ernest Barreto, Kresimir Josic, Evelyn Sander, and Steven J. Schiff

Smith, V. “Method in Experiment: Rhetoric and Reality,” Experimental Economics, 5(2), 2002, 91-110.

Smith, V. “Sustaining Cooperation in Trust Games” (with Kevin McCabe and Mary Rigdon), 2002.

Maksim Tsvetovat , Kathleen Carley, Katia Sycara “Specialists, Generalists and Emergent Market Segmentation: a Multi-Agent Model” Journal of Computational and Mathematical Organizational Theory, 8, 221-234, 2002, Kluwer Academic Publishers

2001

Robert L. Axtell . “Zipf Distribution of U.S. Firm Sizes,” 2001, Science 293: 1818-1820; synopses by P. Ball appeared in the 13 September 2001 issue of Nature and by I. Peterson in the 20 October 2001 issue of Science News; reprinted in Complexity in Economics, J. Barkley Rosser, ed., Edward Elgar: Cheltenham, UK (2004)

Robert L. Axtell, Clinton J. Andrews and M.J. Small. “Agent-Based Modeling and Industrial Ecology”, 2001, Journal of Industrial Ecology, vol. 5, no. 4: 10-13

Robert L. Axtell , Joshua M. Epstein and H. Peyton Young. “The Emergence of Classes in a Multi-Agent Bargaining Model”, 2001, in S. Durlauf and H.P. Young, eds., Social Dynamics, MIT Press: Cambridge, Mass.; a synopsis by B. Bowers appeared in the 28 March 1998 issue of Science News

Leonard, C. M., Eckert, M. A., Lombardino, L. J., Given, B. K., Eden, G. F. (2001) Two anatomical phenotypes for reading disability. Cognitive Neuroscience Society Poster Session.

Nash H., Blair D., Grefenstette J. (2001). Comparing algorithms for large-scale sequence analysis. Proc. 2nd IEEE Int. Symp. on Bioinformatics and Biomedical Engineering (BIBE 2001), Rockville MD., 89-96.

R.Lin, K.Karpa, N. Kabbani, P. Goldman-Rakic, and R. Levenson. Dopamine D2 and D3 receptors are linked to the actin cytoskeleton via interaction with Filamin A. Proc Natl Acad Sci. 2001. 98 (9): 5258-63.

Morowitz, Harold J. Annals , New York Academy of Sciences, 929, April 2001. The Epistemological Paradox of Mind and Matter.

Morowitz, Harold J ., R. W. Shumaker, A. M. Palkovich, B. B. Beck, and G. A. Guagnano.Journal of Comparative Psychology, 115, 2001. Spontaneous Use of Magnitude Discrimination and Ordination by the Orangutan (Pongo pygmaeus)

Lester, D.S. and Olds, J.L. (2001) Biomedical imaging: 2001 and beyond. Anat Rec. Apr15;265(2):35-6.

Olds, J.L. (2001) Are There Really Too Many Biomedical Trainees? Anat. Rec. 265:157-158

Olds, J.L. (2001) Inalienable Thoughts, Complexity 6(5):23-27.

Smith, V. “Turning off the Lights,” (with Stephen J. Rassenti and Bart Wilson)Regulation, 24(3), Fall, 2001.

Smith, V. “Theory, Experiment and the FCC Spectrum Auctions,” (with Jeffrey Banks, Mark Olson, David Porter and Stephen Rassenti), to appear, Journal of Economic Behavior and Organization, 2001.

2000

Robert L. Axtell . “Effects of Interaction Topology and Activation Regime in Several Multi-Agent Systems,” 2000, in Scott Moss and P. Davidsson, eds., Multi Agent Based Simulation, Lecture Notes in Artificial Intelligence, vol. 1979. Springer: N.Y.

Robert L. Axtell . “Why Agents? On the Varied Motivations for Agent Computing in the Social Sciences,” F. Liljeros, discussant, 2000, in C.M. Macal and D. Sallach, eds., Agent Simulation: Applications, Models and Tools. University of Chicago/Argonne National Laboratory: Batavia, Ill; available online at: www.agent2002.anl.gov/proceedings/1999.pdf

Brown, C., Jones, K., Zeffiro, T. Given, B., Eden, G. (2000). Functional magnetic resonance imaging of phonological processing in reading-disabled children. Cognitive Neuroscience Society Poster Session.

Given, B. K. (2000). Cultural creation of intelligence. A book review of The making of intelligence by Ken Richardson. Complexity, 6(2), 59-62.

Given, Barbara K. (2000). Learning styles: A guide for teachers and parents (revised). Oceanside, CA: Learning Forum Publications

Given, B. K. (2000, November) Theaters of the mind. Education Leadership, 58(3), 72-75 Given, B. K., Knight, D., Patrick, S., & McGuire, N. (1999/2000) Personality types and learning styles of college freshman. National Forum of Applied Educational Research Journal, 13(1), pp. 23-49.

Given, B.K., Tyler, E., Hall, N., Wood, M., Johnson, W., Cabrera, E., Esterbrook, R., Free, W., Little, L., Thompson, A., & Wheeler, P. (2000 Spring). Addendum to: Tactual resources at the college level: Toys for adult learning. Pp. 43-53.

Given, B.K. & Yaghmour, E. (2000, Feb 18) Phonemic awareness in adolescents: A poster session. International Learning Disabilities Association Conference, Reno, NV.

Eden, G. F., Brown, C. P., Jones, K., Given, B., & Zeffiro, T. A. (2000). Phonological and visual motion processing in reading impaired children. Neuroimage, 11: S183.

Zeffiro, T., Brown, C., Jones, K., Given, B., & Eden, G. (2000). Visual motion processing in reading-disabled children. Cognitive Neuroscience Society.

L. Studer, M. Csete, S.H. Lee, N. Kabbani, J. Walikonis, B. Wold, and R. McKay. Enhanced proliferation, survival, and dopaminergic differentiation of CNS precursors in lowered oxygen. J Neurosci. 2000. 20 (19): 7377-83.

K.Karpa, R.Lin, N.Kabbani, and R.Levenson. The dopamine D3 receptor interacts with itself and the truncated D3 splice variant D3nf: D3-D3nf interaction causes mislocalization of D3 receptors. Mol Pharmacol. 2000. 58 (4): 677-83.

Kaufmann, F., Kalbfleisch, M.L., Castellanos , F.X. (2000). Attention Deficit Disorders and Gifted Students: What Do We Really Know? Monograph: National Research Center on the Gifted and Talented. University of Connecticut, Storrs, CT.

Morowitz, Harold J ., Jennifer D. Kostelnik, Jeremy Yang, and George D. Cody. PNAS 97, No. 14, 7704-7708, July 5, 2000. The Origin of Intermediary Metabolism.

Olds, J.L. (2000) Leaving the First Amendment to the Courts: A Pro-Evolution Strategy for Concerned Scientists. Anat. Rec. 261: 163-164.

Olds, J.L. (2000) Capitol Hill Update Fall 2000. Anat. Rec. 261: 168-169.

1999

Robert L. Axtell and Joshua Epstein. “Coordination in Transient Social Networks: An Agent-Based Model of the Timing of Retirement”, R. Hall, discussant, 1999, in H. Aaron, ed., Behavioral Dimensions of Retirement Economics, Russell Sage/Brookings Institution Press: Washington, D.C.;

Jeffrey S. Dean, George J. Gumerman, Joshua M. Epstein, Robert L. Axtell, Alan C. Swedlund, Miles T. Parker, and Steven McCarroll. “Understanding Anasazi Culture Change Through Agent-Based Modeling” (with several co-authors), 1999, in T. Kohler and G. Gumerman, eds., Dynamics in Human and Primate Societies, Oxford University Press: N.Y.;

Given, B.K., Tyler, E., Hall, N., Wood, M., Johnson, W., Cabrera, E., Esterbrook, R., Free, W., Little, L., Thompson, A., & Wheeler, P. (1999 Spring). Tactual resources at the college level: Toys for adult learners. Journal of Accelerative Learning and Teaching, 24(1-2). Available at: http://TEC.camden-rutgers.edu/JALT. Also, published by ERIC Documents

Grefenstette, J. J. (1999). Evolvability in dynamic fitness landscapes: A genetic algorithm approach. Proc. 1999 Congress on Evolutionary Computation (CEC 99), Washington, DC, IEEE Press, 2031-2038.

Moriarty, D. E., Schultz, A. C. and Grefenstette, J. J. (1999). Evolutionary algorithms for reinforcement learning. Journal of Artificial Intelligence Research, 11:199-229.

Daley, R., Schultz, A., and Grefenstette, J. (1999). Co-evolution of robot behaviors.SPIE Intl. Symposium on Intelligent Systems and Advanced Manufacturing (ISAM ’99),Sept, 1999, Boston MA.

Olds, J.L. (1999) A True Champion of Basic Biomedical Research: A Conversation with Rep. John E. Porter, United States House of Representatives. Anat. Rec. 257: 191-194.

Olds, J.L. (1999) Why Anatomical Scientists Need to Practice Science Advocacy. Anat. Rec. 257:183-184. Besharse, J.C., Carlson, B.M., Jenkins, D.P., Lester, D.S.,

Olds, J.L., Satir P. (1999) Redefining rats, mice, and birds. Science. Apr 2;284(5411):49-50.

1998

Given, B. K. (1998). Psychological and neurobiological support for learning style instruction: Why it works. Reprinted in National Forum of Teacher Education Journal, 8(2), pp. 10-15.

Given, B. K.(1997-1998). Psychological and neurobiological support for learning style instruction: Why it works. National Forum of Applied Educational Research Journal,11(1), 12-17.

Ramsey, C. L., De Jong, K. A., Grefenstette, J. J., Wu, A.S., Durke, D.S. (1998). Genome length as an evolutionary self-adaptation. In Parallel Problem Solving from Nature-5, North Holland.

Burke, D. S., De Jong, K. A., Grefenstette, J. J., Ramsey, C. L. and Wu, A. S. (1998). Putting more genetics into genetic algorithms. Evolutionary Computation 6(4), 387-410.

Freeman, J.H., Scharenberg, A.M., Olds, J.L. and Schreurs, B.G., (1998) Classical Conditioning Increases Membrane-Bound Protein Kinase C in Rabbit Cerebellum, Neuroreport, Aug 3;9(11):2669-73.

Krichmar, J.L., Ascoli, G.A., Hunter, L. and Olds, J.L. (1998), Qualitative Reasoning as a Modeling Tool for Computational Neuroscience. In: Computational Neuroscience: Trends in Research 1998, J.M. Bower Ed. Plenum Press NY.

Olds, J.L., (1998) Reorganization of NIH’s neuroscience study sections: part of a larger integration plan. Anat Rec. Apr; 253(2): 36.

Olds, J.L., (1998) R29 to RO1 transition at NIH. Anat Rec. Feb; 253(1): 5.

Olds, J.L (1998) Capitol Hill update. Anat Rec. Feb; 253(1): 3-4

Olds, J.L. (1998) Administering a National Landmark for Medicine: A Conversation With Dr. Adrianne Noe, Director of the National Museum of Health and Medicine, Washington D.C. Anat. Rec. October; 253(5):135-139.

1997

Given, B. K. (1997, May/June). How to deal with difficult principals: A learning styles approach. Clearing House, 70(5), 257-260.

Given, B. K. (1997). Mild learning disability or learning style difference? In L. Korinek (Ed.), Pride in the past, promise for the future. Virginia Council for Learning Disabilities Special Publication. Williamsburg, VA: College of William and Mary, pp. 57-62.

Dunn, R., Given, B., Thomson, B.K. & Brunner, C. (1997). The international learning-styles network: Where, who, when, what, where, why –and why not? National Forum of Applied Educational Research Journal,11(1), 26-29.

Grefenstette, J. J. (1997). Levels of evolution for control systems. In Genetic Algorithms in Engineering Systems, P. J. Fleming and A. M. S. Zalzala (Eds.). Peter Peregrinus Press, 1997.

Grefenstette, J. J. (1997). Efficient implementations of algorithms. In The Handbook of Evolutionary Computation, T. Baeck, D. Fogel and Z. Michalewicz (Eds.). IOP Publishing and Oxford University Press, 1997.

Grefenstette, J. J . (1997). Rank-based selection. In The Handbook of Evolutionary Computation, T. Baeck, D. Fogel and Z. Michalewicz (Eds.). IOP Publishing and Oxford University Press, 1997.

Grefenstette, J. J. (1997). Proportional selection and sampling algorithms. In The Handbook of Evolutionary Computation, T. Baeck, D. Fogel and Z. Michalewicz (Eds.). IOP Publishing and Oxford University Press, 1997.

Schultz, A. C., Grefenstette, J. J., and De Jong, K. A. (1997). Learning to break things: Adaptive testing of intelligent controllers. In The Handbook of Evolutionary Computation,T. Baeck, D. Fogel and Z. Michalewicz (Eds.). IOP Publishing and Oxford University Press, 1997.

Yamauchi, B., Schultz, A., Adams, W., Graves, K., Grefenstette, J., and Perzanowski, D. (1997). ARIEL: Autonomous robot for integrated exploration and localization. Proc. National Conf. Artificial Intelligence (AAAI-97), Providence, R.I., July 1997, 84-85.

Olds, J.L. Molecular Probes for Protein Kinase C and Related Molecules as Tools for Imaging Memory. J. Physiol. Biochem (rev. esp. fisiol.) 53:51, (1997)

G. A. Ascoli, K.X. Luu, J L. Olds, T. J. Nelson, P.A. Gusev, C. Bertucci, E. Bramanti, A. Raffaelli, P. Salvadori, and D.L., Alkon.(1997) Secondary structure and Ca2+-induced conformational change of calexcitin, a learning-associated protein.. Journal of Biological Chemistry, 272: 24771-24779.

J.L. Krichmar, G.A. Ascoli, L. Hunter and J.L. Olds,. (1997) A Model of Cerebellar Saccadic Motor Learning using Qualitative Reasoning, Lect Notes Comput Sc 1240: 133-145.

De Barry J, Kawahara S, Takamura K, Janoshazi A, Kirino Y, Olds J.L., Lester DS, Alkon DL, Yoshioka T (1997) Time-resolved imaging of protein kinase C activation during sea urchin egg fertilization. Exp Cell Res 234(1):115-124

Hunter, L, Krichmar, J.L., & Olds, J.L.(1997), “Qualitative Reasoning as a Modeling Tool for Computational Neuroscience,” Proceedings of the 11th International Workshop on Qualitative Reasoning. Publication #1036, Instituto di Analisi Numerica C.N.R, Pavia, Italy. pp. 265-276.

Olds, J.L. (1997) Affection for the MBL. Science.Nov 14; 278(5341): 1209.

Krichmar, J.L., Ascoli, G. , Olds, J.L. and Hunter, L. (1997) A novel and Efficient Approach for Modeling Neural Behavior I: Single Purkinje Cell Model. Technical Report published on the web at https://krasnow.gmu.edu/qrn/index.html.

Maksim Tsvetovat , Maria Gini, Bamshad Mobasher, Zbigniev Wieckowski “MAGMA: An Agent-Based Virtual Market for Electronic Commerce,” International Journal of Applied Artificial Intelligence, 11:501-523,1997

1996

R. U. Ayres and Robert L. Axtell. “Foresight as a Survival Characteristic: When (If Ever) Does the Long View Pay?” 1996, Technological Forecasting and Social Change, vol. 51: 209-235

Robert Axtell , Robert Axelrod, Joshua M. Epstein and Michael D. Cohen. “Aligning Simulation Models: A Case Study and Results”, 1996, Computational and Mathematical Organization Theory, vol. 1, no. 2: 123-141; reprinted in R. Axelrod, 1997, The Complexity of Cooperation, Princeton University Press: Princeton, N.J.

Robert L. Axtell and Joshua M. Epstein. “Artificial Societies and Generative Social Science”, 1996, in Proceedings of the International Symposium on Artificial Life and Robotics, M. Sugisaka, editor, Oita, Japan: International Society for Artificial Life and Robotics

Given, B. K. (1995, Summer). Accelerate learning with style. Imagine: International Alliance for Learning Newsletter, 20(2), 1,5.

Given, B. K. (1996, Winter). Accelerative learning and learning style. Society for European Accelerative Learning Newsletter.

Given, B. K. (1996, April). Accelerate with style. Learning Beyond Frontiers (Deutsche Gesellschaft fur Suggestopadisches Journal. Eichenstr.13, 85457 Horlkofen, Germany: Lehren & Lernen) pp 19-20.

Given, B. K. (1996). Learning styles: A synthesized model. Journal for Accelerative Learning and Teaching. 21(1), 9-41. Available from http://camden-www.rutgers.edu/Camden?TEC?NEW � _TEC_web_Page/JALT.html.

Given, B. K.(1996, March). Mild learning disability or learning style difference? ERIC Clearinghouse on Disabilities and Gifted Education. ED 395 431.

Given, B. K. (1996, Spring). Spreading the AL word. Imagine: International Alliance for Learning Newsletter, 3(1), 6.

Given, B. K. (1996). The potential of learning style. In G. Reid (Ed.), Dimensions on dyslexia. Edinburgh, Scotland: Moray House Publications, pp. 327-344.

Given, B.K., Lannen, S., Nicholson, M. & Reid, G.(1996). Learning styles: Unlocking potential. Links 2, 2(1), 26-31.

Grefenstette, J. J. (1996). Genetic learning for adaptation in autonomous robots. InRobotics and Manufacturing: Recent Trends in Research and Applications, Vol. 6, M. Jamshidi, F. Pin and P. Dauchez (Eds.), Proc. Sixth Intl. Symposium on Robotics and Manufacturing, May 1996, ASME Press: New York, 1996, 265-270.

Schultz, A. C., Grefenstette, J. J., and Adams, W. L. (1996). RoboShepherd: Learning a complex behavior. Proc. Robots and Learning Workshop (RoboLearn ’96), May 1996, Key West, Florida, 105-113.

Grefenstette, J. J. and Daley, R. P. (1996). Methods for competitive and cooperative co-evolution. In Adaptation, Co-evolution and Learning in Multiagent Systems: Papers from the 1996 AAAI Symposium, 45-50. Technical Report SS-96-01. Menlo Park, CA: AAAI Press, March 1996.

Nelson, T.J., Cavallaro, S., Yi, C., McPhie, D., Schreurs, B.G., Gusev, P.A., Favit, A., Zohar, O., Kim, J., Beuhausen, S., Ascoli, G. , Olds, J.L., Neve, R., Alkon, D.L. (1996) Calexcitin: A signalling protein that binds calcium, inhibits potassium channels, and enhances membrane excitability. Proc. Natl. Acad. Sci. USA. 93: 13808-13813.

1995

Robert W. Hahn and Robert L. Axtell. “Reevaluating the Relationship between Transferable Property Rights and Command-and-Control Regulation” (with R.W. Hahn), 1995, Journal of Regulatory Economics, vol. 8: 125-148

Grefenstette, J. J. (1995). Predictive models using fitness distributions of genetic operators. In Foundations of Genetic Algorithms 3, D. Whitley (Ed.), San Mateo, CA: Morgan Kaufmann.

Grefenstette, J. J. (1995). Robot learning with parallel genetic algorithms on networked computers. Proc. 1995 Summer Computer Simulation Conf. (SCSC ’95). Society for Computer Simulation, Ottawa, Ontario, Canada.

Olds, J. L., Favit, A. Nelson, T.J., Ascoli, G. Gerstein, A. Cameron, M., Cameron, L., Lester, D.S., Rakow, T. and Alkon, D.L. (1995) Imaging Protein Kinase C Activation in Living Sea Urchin Eggs After Fertilization. Dev. Biol. 172: 675-682.

Olds, J.L. Zip-coding the Dendritic Spine: A Biolgically Plausible Solution to biological addressing within mammalian nerve cells. (1995) Proceedings International Neural Networks Society ’95.

Kim C.S., Han, Y., Etcheberrigaray, R., Nelson T.J., Olds, J.L. and Alkon, D.L. Alzheimer and beta-amyloid-treated fibroblasts demonstrate a decrease in memory-associated GTP-binding protein, Cp20. (1995) Proc Natl Acad Sci U S A. 92(7): 3060-3064

Golski, S., Olds, J.L., Mishkin, M., Olton, D.and Alkon, D.L. (1995) Protein Kinase C in the Hippocampus is Altered by Spatial but not by Cued Discriminations: A Component Task Analysis. Brain Research. 676: 53-62.

1994

Robert L. Axtell and Joshua M. Epstein. “Agent-Based Modeling: Understanding Our Creations”, 1994, Bulletin of the Santa Fe Institute, vol. IX, number 2: 29-32. Proposed the first scale for rating agent-based computational simulations on a realism-abstraction dimension.

Given, B. K. (1994). Five habits of the agile learner. In L. Korinek & E. Nowacek (Eds.), Proceedings of the 1993 Council for Learning Disabilities Conference, Williamsburg, VA: College of William and Mary.

Given, B.K. (1994). Operation Breakthrough for continuous self-systems improvement. Intervention, 30(1), 38-46.

Grefenstette, J. J. (1994). Evolutionary algorithms in robotics. In Robotics and Manufacturing: Recent Trends in Research, Education and Applications, v5. Proc. Fifth Intl. Symposium on Robotics and Manufacturing, ISRAM 94, M. Jamshedi and C. Nguyen (Eds.), 65-72, ASME Press: New York.

Grefenstette, J. J. (Ed.) (1994). Genetic Algorithms for Machine Learning. Kluwer Academic Publishers.

Ramsey, C. L. and Grefenstette, J. J. (1994). Case-based anytime learning. InCase-Based Reasoning: Papers from the 1994 Workshop, (D. W. Aha, Ed.). Technical Report WS-94-07, AAAI Press: Menlo Park, CA, Aug. 1994.

Olds, J. L., (1994) Invited Book Review: The Computational Brain, Churchland, P.S. and Sejnowski, T J. MIT Press, Cambridge MA. 1992; Contemp. Psychol. 39: 127-130.

Olds, J.L. and Alkon D.L. (1994) The Role of PKC in Associative Learning. Chapter. Proceedings of Protein Kinase C in the CNS: Focus on Neuronal Plasticity Milan Italy Ed:Canonico, P. Masson Milan. pp57-67.

Olds, J.L., Bhalla, U.S., McPhie, D.L., Bower, J. and Alkon D.L. (1994) Lateralization of Membrane-Associated PKC Distribution in Rat Olfactory Cortex: Specific to Learning in the Olfactory Modality. Behavioral Brain Res. 61: 37-46. Lester, D.S.,

Olds, J.L., Youstra. S. and Schreurs, B. (1994) Incorporation of Fluorescent Lipid Substrates into Living Brain Slices. Neuroprotocols. 5:5-12.

Olds, J.L., Frey, K.A. and Agranoff, B.W. (1994) Sequential Double-Label Deoxyglucose Autoradiography for Determining Cerebral Metabolic Change: Origins of Variability within a Single Brain. Neuroprotocols. 5:12-24.

Lester, D.S., Olds, J.L., Scheurs, B.G., McPhie, D L., Bramham, C. R., and Alkon, D.L. (1994) Incorporation of Fluorescent Lipids into Rabbit Hippocampal and Cerebellar slices. Neuroimaging. 1: 264-275.

Lester D.S. and Olds, J.L. (1994) Invited Editorial Neuroprotocols. 5: 1.

Smith, V. “Economics in the Laboratory,” Journal of Economic Perspectives, Vol. 8, No. 1, Winter 1994, 113-131.

1993

Grefenstette, J. J. (Ed.) (1993). Special Track on Genetic Algorithms, IEEE Expert, IEEE Press.

Grefenstette, J. J. (1993). Deception considered harmful. In Foundations of Genetic Algorithms 2, D. Whitley (Ed.), San Mateo, CA: Morgan Kaufmann.

Cobb, H. G. and Grefenstette, J. J. (1993). Genetic algorithms for tracking changing environments. Genetic Algorithms: Proc. Fifth Intl. Conf. (ICGA93), San Mateo: Morgan Kaufmann, 523-530.

Ramsey, C. L. and Grefenstette, J. J. (1993). Case-based initialization of genetic algorithms. Genetic Algorithms: Proc. Fifth Intl. Conf. (ICGA93), San Mateo: Morgan Kaufmann, 84-91.

Graig, A.M., Olds, J.L., Schreurs, B.G., Scharenberg, A.M. and Alkon, D.L. (1993) Quantitative Distribution of Protein Kinase C a , b, g, and e mRNAs in the Hippocampus of Control and Nictitating Membrane Conditioned Rabbits. Molecular Brain Research. 19:269-276.

Olds, J.L. and Alkon, D.L. (1993) Protein Kinase C: A Nexus in the Biochemical Events that Underlie Associative Learning. Acta Neurobiologia 53: 197-207.

Mangi, H., Etcheberrigarray, R. and Olds, J. L. Lithium Decreases Membrane-Associated Protein Kinase C in Hipppocampus: Selectivity for the Alpha Isozyme (1993) J. Neurochem. 61:2303-2310.

Sanchez-Andres, J.V., Olds, J.L. and Alkon, D.L. (1993) Gated Informational Transfer within the Mammalian Hippocampus: A New Hypothesis Behavioral Brain Research, 54: 111-116.

McPhie, D.L., Matzel, L., Olds, J.L. and Alkon D.L. (1993) Learning-specific changes in the distribution of Protein Kinase C within the Type B Photoreceptor of Hermissenda crassicornis. J. Neurochem. 60:646-651.

1992

Grefenstette, J. J. (1992). The evolution of strategies for multi-agent environments.Adaptive Behavior 1(1), 65-90.

Grefenstette, J. J. (1992). Genetic algorithms for changing environments. Proc. Parallel Problem Solving from Nature-2, R. Maenner & B. Manderick (Eds.), North-Holland, 137-144.

Connor, J.H., Olds, J.L., Lester D.S., McPhie, D.L., Senft, S.L., Johnston, J.A. and Alkon, D.L. Heterogenous Distribution of Fluorescent Phorbol Ester Signal in Living Sea Urchin Embryos.(1992) Biological Bulletin. 183: 365-366.

Olds, J.L. and Sanchez-Andres, J.V. The Hippocampus Reconsidered: Gated Informational Transfer Allows Formation of Cognitive Maps. (1992) Proceedings International Neural Networks Society ’92. Vol III:385-389.

Lo Turco, J.J., Olds, J.L., Bank, B., and Alkon, D.L. (1992) Biophysical and Biochemical Records of Associative Memory in Rabbit CA1 Pyramidal Neurons and Hermissenda B Cells, Chapter 11 pp231-251 in Correlates of Classical Conditioning, Lawrence Erlbaum Associates Pubs, Hillsdale N.J. Gormezano and Wasserman Eds.

1991

Grefenstette, J. J. (1991). Strategy acquisition with genetic algorithms, in Handbook of Genetic Algorithms, Davis, L. D. (Ed.), Boston: Van Nostrand Reinhold.

Grefenstette, J. J . (1991). Lamarckian learning in multi-agent environments. Proc. Fourth Intl. Conf. of Genetic Algorithms, San Mateo, CA: Morgan Kaufmann, 303-310.

Olton, D.S., Golski, S., Gorman, L.K., Olds, J.L., Alkon, D.L. and Mishkin, M. Behaviorally-Induced Changes in the Neural Activity of the Hippocampus. (1991), 16:193-220. Brain Research Reviews.

Scharenberg, A., Olds, J.L., Shreurs, B. Craig, A.M. and Alkon, D.L. Protein Kinase C Redistribution Within CA3 Stratum Oriens During Acquisition of Nictitating Membrane Conditioning in the Rabbit. Proc. Natl. Acad. Sci. USA. (1991) 88:6637-6641.

Olds, J.L. and Alkon, D.L. A Role for Protein Kinase C in Associative Learning. The New Biologist (1991) 3:27-35.

1990

Given, B.K., (1990, May). Integrated strategies instruction: A new concept in teaching. Phi Delta Kappa, George Mason University Chapter 1368 Newsletter, 1-2.

Grefenstette, J. J. (1990). Genetic algorithms and their applications. In The Encyclopedia of Computer Science and Technology, 21 (Supplement 6), A. Kent and J. G. Williams, (Eds.), New York: Marcel Dekker.

Grefenstette, J. J. , Ramsey, C. L. and Schultz, A. C. (1990). Learning sequential decision rules using simulation models and competition. Machine Learning 5(4), 355-381.

Olds, J.L. and Alkon, D.L. (1990) Imaging Memory–Molecular Approaches to tracking the engram. Bio. Chem. HS. 371: 905.

Olds, J.L., Golski, S., McPhie,D.L., Olton, D., Mishkin, M. and Alkon, D.L. Discrimination Learning Alters the Distribution of Protein Kinase C in the Hippocampus of Rats. J. Neurosci. (1990) 10:3707-3713.

Alkon, D.L., Ikeno, H., Dworkin, J., McPhie, D.L., Olds, J.L., Lederhendler, I., Matzel, L. Shreurs, B., Kuzerian, A. and Collin, C. Contraction of Neuronal Branching Volume: An Anatomic Correlate of Pavlovian Conditioning. Proc. Natl. Acad. Sci. USA (1990) 87:1611-1614.

1989

Alkon, D.L., Olds, J.L. and Nelson, T. The Physical Reality of Memory. Proceedings of the Takeda Symposium (1989) p. 229-240.

Olds, J.L., Anderson, M.L., McPhie, D.L., Staten, L.D. and Alkon, D.L. Imaging of Memory-Specific Changes in the Distribution of Protein Kinase C in the Hippocampus. Science. 245:866-869 (1989).

1988

Grefenstette, J. J. (1988). Credit assignment in rule discovery systems based on genetic algorithms. Machine Learning 3(2-3), 225-245. Fitzpatrick, J. M. and Grefenstette, J. J. (1988). Genetic algorithms in noisy environment. Machine Learning 3(2-3), 101-120.

1987

Given, B.K., Stack, B. & Hickey, J. (1987). TMJ dysfunction in children: The development of a screening instrument and parent questionnaire. Cranio Journal of Craniomandibular Practice, 5(1), 79-86.

Grefenstette, J. J. (1987). Incorporating problem specific knowledge into genetic algorithms, in Genetic Algorithms and Simulated Annealing, Davis, L. D. (Ed.), London: Pitman.

Fitzpatrick, J. M., Pickens, D. R., Grefenstette, J. J., Price, R. R. and James, A. E. (1987). A technique for automatic motion correction in DSA. Optical Engineering 26(11), 1085-1093.

Smith, V. “Experimental Methods in Economics,” The New Palgrave: A Dictionary of Economic Theory and Doctrine, (eds. J. Eatwell, M. Milgate and P. Newman), Macmillan Press, Inc., October, 1987.

1986

Given, B.K. & Stack, B. (1986). Temporo-mandibular joint dysfunction in children: A need for awareness. Journal of School Health, 56(3), 86-89.

Grefenstette, J. J. (1986), Optimization of control parameters for genetic algorithms.IEEE Trans. Systems, Man, and Cybernetics, SMC-16(1) 122-128.

1985

Olds, J.L., Frey, K.A., Ehrenkaufer, R.L. and Agranoff, B.W., A Sequential Double-Label Autoradiographic Method That Quantifies Altered Rates of Regional Glucose Metabolism, Brain Res., 361:217-224 (1985).

Gorenstein, C., Bundman, M.C., Lew, P.J., Olds, J.L. and Ribak, C.E., Dendritic Transport I: Colchicine Stimulates The Transport of Lysosomal Enzymes from Cell Bodies to Dendrite, J. Neurosci., 5:2009-2017 (1985).

1983

Grefenstette, J. J. (1983). Stability in L systems. Theoretical Computer Science 24(1),53-71.

Grefenstette, J. J. (1983). Network structure and the firing squad synchronization problem. Journal of Computer and System Sciences 26(1), 139-152.

Alkon, D.L., Acosta-Urquidi, J., Olds, J.L., and Neary, J.T., Protein Kinase Injection Reduces Voltage Dependent Potassium Currents, Science, 219:303-305(1983).

1982

Given, B. K. (1982). Learning disabilities and learning problems: The ambiguous junction between special education and regular classroom instruction. Counterpoint, 3(2), 23.

Smith, V. “Microeconomic Systems as an Experimental Science,” American Economic Review, December, 1982.

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